Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020764A_C01 KMC020764A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P35100|CLPA_PEA ATP-dependent clp protease ATP-binding subuni... 163 1e-39
ref|NP_568746.1| ATP-dependent Clp protease ATP-binding subunit ... 121 5e-27
sp|P31542|CLAB_LYCES ATP-dependent clp protease ATP-binding subu... 121 7e-27
sp|P31541|CLAA_LYCES ATP-dependent clp protease ATP-binding subu... 115 3e-25
pir||T52292 endopeptidase Clp (EC 3.4.21.92) ATP-binding chain C... 115 4e-25
>sp|P35100|CLPA_PEA ATP-dependent clp protease ATP-binding subunit clpA homolog,
chloroplast precursor gi|419773|pir||S31164
endopeptidase Clp (EC 3.4.21.-) ATP-binding chain,
chloroplast [similarity] - garden pea
gi|169128|gb|AAA33680.1| nuclear encoded precursor to
chloroplast protein
Length = 922
Score = 163 bits (413), Expect = 1e-39
Identities = 82/121 (67%), Positives = 98/121 (80%)
Frame = +1
Query: 196 MSRVLAQSITIPGLVCGRSHGHNNRSTMSRRSLKMMSTLQAPALRMSGFSGLRTYNNLDT 375
M+RVLAQS+++PGLV G + S S+RS+K M L+ LRMSGFSGLRT+N+L+T
Sbjct: 1 MARVLAQSLSVPGLVAGHKDSQHKGSGKSKRSVKTMCALRTSGLRMSGFSGLRTFNHLNT 60
Query: 376 MLRPGLDFRSKVFGVTTSRKARASRCIPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGT 555
M+RPGLDF SKV +SR+ARA R IP+AMFERFTEKAIKVIML+QEEARRLGHNFVGT
Sbjct: 61 MMRPGLDFHSKVSKAVSSRRARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 120
Query: 556 E 558
E
Sbjct: 121 E 121
Score = 40.8 bits (94), Expect = 0.012
Identities = 17/27 (62%), Positives = 24/27 (87%)
Frame = +1
Query: 478 FTEKAIKVIMLSQEEARRLGHNFVGTE 558
FT +A +V+ LSQEEAR+LGHN++G+E
Sbjct: 170 FTPRAKRVLELSQEEARQLGHNYIGSE 196
>ref|NP_568746.1| ATP-dependent Clp protease ATP-binding subunit (ClpC1); protein id:
At5g50920.1, supported by cDNA: gi_20856955, supported
by cDNA: gi_2921157 [Arabidopsis thaliana]
gi|9758239|dbj|BAB08738.1| ATP-dependent Clp protease,
ATP-binding subunit [Arabidopsis thaliana]
gi|20856956|gb|AAM26692.1| AT5g50920/K3K7_7 [Arabidopsis
thaliana]
Length = 929
Score = 121 bits (304), Expect = 5e-27
Identities = 74/121 (61%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Frame = +1
Query: 199 SRVLAQSITIPGLVCGRSHGHNNRSTMSRRSLKMM-STLQAPALRMSGFSGLRTYNNLDT 375
+RVLAQS T P L C + + + S SRRS+KMM S LQ LRM GF GLR N LDT
Sbjct: 5 TRVLAQS-TPPSLACYQRNVPSRGSGRSRRSVKMMCSQLQVSGLRMQGFMGLRGNNALDT 63
Query: 376 MLRPGLDFRSKVFGVTTSRKARASRCIPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGT 555
+ + DF SKV K +ASR KAMFERFTEKAIKVIML+QEEARRLGHNFVGT
Sbjct: 64 LGKSRQDFHSKVRQAMNVPKGKASRFTVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 123
Query: 556 E 558
E
Sbjct: 124 E 124
Score = 38.1 bits (87), Expect = 0.075
Identities = 16/27 (59%), Positives = 23/27 (84%)
Frame = +1
Query: 478 FTEKAIKVIMLSQEEARRLGHNFVGTE 558
FT +A +V+ LS EEAR+LGHN++G+E
Sbjct: 173 FTPRAKRVLELSLEEARQLGHNYIGSE 199
>sp|P31542|CLAB_LYCES ATP-dependent clp protease ATP-binding subunit clpA homolog CD4B,
chloroplast precursor gi|100190|pir||B35905
endopeptidase Clp (EC 3.4.21.-) ATP-binding chain cd4B,
chloroplast [similarity] - tomato
gi|170435|gb|AAA34161.1| ATP-dependent protease (CD4B)
Length = 923
Score = 121 bits (303), Expect = 7e-27
Identities = 64/121 (52%), Positives = 82/121 (66%)
Frame = +1
Query: 196 MSRVLAQSITIPGLVCGRSHGHNNRSTMSRRSLKMMSTLQAPALRMSGFSGLRTYNNLDT 375
M+R L QS +IP V G N S ++R++ M+ Q+ +L + F+GLR N +DT
Sbjct: 1 MARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDT 60
Query: 376 MLRPGLDFRSKVFGVTTSRKARASRCIPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGT 555
++R G +SKV T R+ R R +PKAMFERFTEKAIKVIML+QEEARRLGHNFVGT
Sbjct: 61 LVRSGETLQSKVAAATYVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 120
Query: 556 E 558
E
Sbjct: 121 E 121
Score = 38.1 bits (87), Expect = 0.075
Identities = 16/27 (59%), Positives = 23/27 (84%)
Frame = +1
Query: 478 FTEKAIKVIMLSQEEARRLGHNFVGTE 558
FT +A +V+ LS EEAR+LGHN++G+E
Sbjct: 170 FTPRAKRVLELSLEEARQLGHNYIGSE 196
>sp|P31541|CLAA_LYCES ATP-dependent clp protease ATP-binding subunit clpA homolog CD4A,
chloroplast precursor gi|100189|pir||A35905
endopeptidase Clp (EC 3.4.21.-) ATP-binding chain cd4A,
chloroplast [similarity] - tomato
gi|170433|gb|AAA34160.1| ATP-dependent protease (CD4A)
Length = 926
Score = 115 bits (289), Expect = 3e-25
Identities = 64/123 (52%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Frame = +1
Query: 193 IMSRVLAQSITIPGLVCGRSHGHNNRSTMSRRSLKMMSTLQAPALRMSGFSGLRTYNNLD 372
+M+R L QS I V G G N S +R+++M+ ++ + R++ F+GLR N LD
Sbjct: 1 MMARALVQSTNILPSVAGERAGQFNGSRKDQRTVRMLCNVKCCSSRLNNFAGLRGCNALD 60
Query: 373 TML-RPGLDFRSKVFGVTTSRKARASRCIPKAMFERFTEKAIKVIMLSQEEARRLGHNFV 549
T+L + G SKV T R+ R R +PKAMFERFTEKAIKVIML+QEEARRLGHNFV
Sbjct: 61 TLLVKSGETLHSKVAAATFVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFV 120
Query: 550 GTE 558
GTE
Sbjct: 121 GTE 123
Score = 38.1 bits (87), Expect = 0.075
Identities = 16/27 (59%), Positives = 23/27 (84%)
Frame = +1
Query: 478 FTEKAIKVIMLSQEEARRLGHNFVGTE 558
FT +A +V+ LS EEAR+LGHN++G+E
Sbjct: 172 FTPRAKRVLELSLEEARQLGHNYIGSE 198
>pir||T52292 endopeptidase Clp (EC 3.4.21.92) ATP-binding chain C, chloroplast
[imported] - Arabidopsis thaliana
gi|2921158|gb|AAC04687.1| ClpC [Arabidopsis thaliana]
Length = 928
Score = 115 bits (288), Expect = 4e-25
Identities = 70/120 (58%), Positives = 80/120 (66%)
Frame = +1
Query: 199 SRVLAQSITIPGLVCGRSHGHNNRSTMSRRSLKMMSTLQAPALRMSGFSGLRTYNNLDTM 378
+RVLAQS T P L C + + + S SRRS+KMM + L M GF GLR N LDT+
Sbjct: 5 TRVLAQS-TPPSLACYQRNVPSRGSGRSRRSVKMMCIIFNVWLPMQGFMGLRGNNALDTL 63
Query: 379 LRPGLDFRSKVFGVTTSRKARASRCIPKAMFERFTEKAIKVIMLSQEEARRLGHNFVGTE 558
+ DF SKV K +ASR KAMFERFTEKAIKVIML+QEEARRLGHNFVGTE
Sbjct: 64 GKSRQDFHSKVRQAMNVPKGKASRFTVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTE 123
Score = 34.3 bits (77), Expect = 1.1
Identities = 14/27 (51%), Positives = 21/27 (76%)
Frame = +1
Query: 478 FTEKAIKVIMLSQEEARRLGHNFVGTE 558
FT +A +V+ LS E R+LGHN++G+E
Sbjct: 172 FTPRAKRVLELSLEATRQLGHNYIGSE 198
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,550,388
Number of Sequences: 1393205
Number of extensions: 11203395
Number of successful extensions: 37057
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 31437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35686
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
