Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020642A_C01 KMC020642A_c01
(449 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_345238.1| transcriptional regulator, MerR family [Strepto... 33 0.60
ref|NP_358243.1| Regulator of the multidrug efflux pump pmrA [St... 33 0.60
ref|NP_562479.1| hypothetical protein [Clostridium perfringens] ... 32 2.3
ref|NP_473157.1| ABC transporter, putative [Plasmodium falciparu... 31 3.9
gb|EAA09897.1| agCP11796 [Anopheles gambiae str. PEST] 31 3.9
>ref|NP_345238.1| transcriptional regulator, MerR family [Streptococcus pneumoniae
TIGR4] gi|25303523|pir||E95085 transcription regulator,
MerR family [imported] - Streptococcus pneumoniae
(strain TIGR4) gi|6179679|emb|CAB59899.1| regulator of
pmrA [Streptococcus pneumoniae]
gi|14972213|gb|AAK74878.1| transcriptional regulator,
MerR family [Streptococcus pneumoniae TIGR4]
Length = 246
Score = 33.5 bits (75), Expect = 0.60
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = +1
Query: 178 YYFWTDFSQPKPKGKRERKETQLLVHIVVTMSK*YDHKEQNHYSSLIFHLTKSYKLKKGD 357
YY + FS K + + T LL H+ + Y +E+ H +LI L K+ + +KG+
Sbjct: 52 YYKYLGFSLEKIAELLKEERTDLLPHLTRQLD--YLTRERQHLDTLISTLQKTIQEQKGE 109
Query: 358 KTKTNMLIYEGCKYQHSMHEKQ 423
+ T + G YQ + Q
Sbjct: 110 RKMTIEEKFTGFSYQDNQKYHQ 131
>ref|NP_358243.1| Regulator of the multidrug efflux pump pmrA [Streptococcus
pneumoniae R6] gi|25303525|pir||A97953 multidrug efflux
pump pmrA regulator [imported] - Streptococcus
pneumoniae (strain R6) gi|15458235|gb|AAK99453.1|
Regulator of the multidrug efflux pump pmrA
[Streptococcus pneumoniae R6]
Length = 220
Score = 33.5 bits (75), Expect = 0.60
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = +1
Query: 178 YYFWTDFSQPKPKGKRERKETQLLVHIVVTMSK*YDHKEQNHYSSLIFHLTKSYKLKKGD 357
YY + FS K + + T LL H+ + Y +E+ H +LI L K+ + +KG+
Sbjct: 26 YYKYLGFSLEKIAELLKEERTDLLPHLTRQLD--YLTRERQHLDTLISTLQKTIQEQKGE 83
Query: 358 KTKTNMLIYEGCKYQHSMHEKQ 423
+ T + G YQ + Q
Sbjct: 84 RKMTIEEKFTGFSYQDNQKYHQ 105
>ref|NP_562479.1| hypothetical protein [Clostridium perfringens]
gi|18145226|dbj|BAB81269.1| hypothetical protein
[Clostridium perfringens str. 13]
Length = 188
Score = 31.6 bits (70), Expect = 2.3
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -1
Query: 371 LVFVLSPFFNLYDLVKWKIREE*WFCSLWSYYLDIVTTIWTRS*VSFL--SLFPL 213
+VF +S F YD+VKW WF S++ YL ++ W + VS L SLF L
Sbjct: 39 IVFQISIFMGNYDVVKWAP----WFKSIY-MYLFLIPIFWYKEYVSALIGSLFIL 88
>ref|NP_473157.1| ABC transporter, putative [Plasmodium falciparum 3D7]
gi|7494185|pir||T18419 hypothetical protein C0125w -
malaria parasite (Plasmodium falciparum)
gi|3647346|emb|CAB10570.1| ABC transporter, putative
[Plasmodium falciparum 3D7]
Length = 1365
Score = 30.8 bits (68), Expect = 3.9
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Frame = +3
Query: 3 ENKLEKKFQEINYK*QKYMVIISSPS---------KFTGSLNANL-RNIWAYTLVLRTER 152
+NKL+KK QEIN + + Y I + + KF L N +NI L L ER
Sbjct: 664 QNKLKKKIQEINMQ-EVYQFIKNDHALIIKYKLDRKFIRFLKTNYKKNIILLILKLYKER 722
Query: 153 NLQT*GPFLLFLDRLQSTKT*RKKGKE 233
N FL D + S K K K+
Sbjct: 723 NNSVSDNFLFLFDNISSFKNLSIKDKK 749
>gb|EAA09897.1| agCP11796 [Anopheles gambiae str. PEST]
Length = 138
Score = 30.8 bits (68), Expect = 3.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 88 QVL*MLILGTFGHTH*FFVQKGTCKLRDHSYY 183
+VL +LILG+ H+H FF ++G C + +Y
Sbjct: 37 RVLFVLILGSIHHSHRFFRRRGCCTCSSYWFY 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,288,742
Number of Sequences: 1393205
Number of extensions: 7549380
Number of successful extensions: 15306
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15300
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
