Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020590A_C01 KMC020590A_c01
(438 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA04767.1| ripening-induced protein [Fragaria vesca] 76 8e-14
gb|AAL06644.1| putative quinone oxidoreductase [Fragaria x anana... 76 8e-14
dbj|BAC22575.1| contains EST AU032464(S10552)~quinone oxidoreduc... 75 2e-13
pir||T10824 auxin-induced protein (clone MII-3) - mung bean gi|1... 72 2e-12
ref|NP_173786.1| putative auxin-induced protein; protein id: At1... 65 2e-10
>emb|CAA04767.1| ripening-induced protein [Fragaria vesca]
Length = 337
Score = 76.3 bits (186), Expect = 8e-14
Identities = 37/67 (55%), Positives = 46/67 (68%)
Frame = -1
Query: 426 PSHPRAVYSSLTVSGESLEKLEPYLERGELKAVIDPTGPYHFDNVIEAFRYLETGRAWGK 247
P+ P A+ LT G LEKL+PYLE G++K V+DPT PY F V+EAF YLE+ RA GK
Sbjct: 271 PATPPAILFVLTSKGSVLEKLKPYLESGKVKPVLDPTSPYPFTKVVEAFGYLESSRATGK 330
Query: 246 VVISCFP 226
VV+ P
Sbjct: 331 VVVYPIP 337
>gb|AAL06644.1| putative quinone oxidoreductase [Fragaria x ananassa]
Length = 339
Score = 76.3 bits (186), Expect = 8e-14
Identities = 37/67 (55%), Positives = 46/67 (68%)
Frame = -1
Query: 426 PSHPRAVYSSLTVSGESLEKLEPYLERGELKAVIDPTGPYHFDNVIEAFRYLETGRAWGK 247
P+ P A+ LT G LEKL+PYLE G++K V+DPT PY F V+EAF YLE+ RA GK
Sbjct: 273 PATPPAILFVLTSKGSVLEKLKPYLESGKVKPVLDPTSPYPFTKVVEAFGYLESSRATGK 332
Query: 246 VVISCFP 226
VV+ P
Sbjct: 333 VVVYPIP 339
>dbj|BAC22575.1| contains EST AU032464(S10552)~quinone oxidoreductase-like protein
[Oryza sativa (japonica cultivar-group)]
Length = 309
Score = 74.7 bits (182), Expect = 2e-13
Identities = 35/57 (61%), Positives = 42/57 (73%)
Frame = -1
Query: 396 LTVSGESLEKLEPYLERGELKAVIDPTGPYHFDNVIEAFRYLETGRAWGKVVISCFP 226
+T G LEKL PYLE G++K ++DP GP+ F V+EAF YLETGRA GKVVIS P
Sbjct: 253 VTSDGSVLEKLNPYLESGKVKPLVDPKGPFAFSQVVEAFSYLETGRATGKVVISPIP 309
>pir||T10824 auxin-induced protein (clone MII-3) - mung bean
gi|1184121|gb|AAA87182.1| auxin-induced protein [Vigna
radiata]
Length = 317
Score = 72.0 bits (175), Expect = 2e-12
Identities = 34/67 (50%), Positives = 44/67 (64%)
Frame = -1
Query: 426 PSHPRAVYSSLTVSGESLEKLEPYLERGELKAVIDPTGPYHFDNVIEAFRYLETGRAWGK 247
P+ P A+ LT G+ LEKL PYLE G++K ++DP P+ F +EAF YL+T RA GK
Sbjct: 251 PATPPAIPFLLTSDGDLLEKLRPYLENGQVKPILDPKSPFPFSQTVEAFSYLKTNRATGK 310
Query: 246 VVISCFP 226
VVI P
Sbjct: 311 VVIYPIP 317
>ref|NP_173786.1| putative auxin-induced protein; protein id: At1g23740.1, supported
by cDNA: 155143., supported by cDNA: gi_15724192,
supported by cDNA: gi_20334863 [Arabidopsis thaliana]
gi|15724193|gb|AAL06488.1|AF411799_1 At1g23740/F5O8_27
[Arabidopsis thaliana] gi|20334864|gb|AAM16188.1|
At1g23740/F5O8_27 [Arabidopsis thaliana]
Length = 386
Score = 65.1 bits (157), Expect = 2e-10
Identities = 29/57 (50%), Positives = 40/57 (69%)
Frame = -1
Query: 396 LTVSGESLEKLEPYLERGELKAVIDPTGPYHFDNVIEAFRYLETGRAWGKVVISCFP 226
+T +G+ L+KL PY+E G++K V+DP GP+ F V +AF YLET A GKVV+ P
Sbjct: 330 VTSNGDVLKKLNPYIESGKVKPVVDPKGPFPFSRVADAFSYLETNHATGKVVVYPIP 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,399,476
Number of Sequences: 1393205
Number of extensions: 8953571
Number of successful extensions: 21343
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 20867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21334
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
