Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020566A_C01 KMC020566A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65821.1| unknown [Arabidopsis thaliana] 57 8e-08
ref|NP_566240.1| expressed protein; protein id: At3g04860.1, sup... 57 8e-08
ref|NP_198167.1| putative protein; protein id: At5g28150.1, supp... 48 5e-05
gb|EAA18487.1| hypothetical protein [Plasmodium yoelii yoelii] 34 0.96
gb|AAB92357.1| triple LIM domain protein [Homo sapiens] 34 0.96
>gb|AAM65821.1| unknown [Arabidopsis thaliana]
Length = 289
Score = 57.4 bits (137), Expect = 8e-08
Identities = 32/58 (55%), Positives = 34/58 (58%)
Frame = -3
Query: 482 SLGNAVFMFRTCLSEEKMWASQNLSDANVLQWSFSQRFPESKSQGLGFSHVLYAWKNE 309
S GNAVFMFRTC S EK W SF+Q SKSQ GFS +LYAWKNE
Sbjct: 245 SPGNAVFMFRTCQSVEKTW-------------SFTQVPTSSKSQSFGFSLILYAWKNE 289
>ref|NP_566240.1| expressed protein; protein id: At3g04860.1, supported by cDNA:
5170., supported by cDNA: gi_16612260 [Arabidopsis
thaliana] gi|12322843|gb|AAG51405.1|AC009465_5 unknown
protein; 64727-65596 [Arabidopsis thaliana]
gi|16612261|gb|AAL27500.1|AF439828_1 AT3g04860/T9J14_19
[Arabidopsis thaliana] gi|21928087|gb|AAM78072.1|
AT3g04860/T9J14_19 [Arabidopsis thaliana]
Length = 289
Score = 57.4 bits (137), Expect = 8e-08
Identities = 32/58 (55%), Positives = 34/58 (58%)
Frame = -3
Query: 482 SLGNAVFMFRTCLSEEKMWASQNLSDANVLQWSFSQRFPESKSQGLGFSHVLYAWKNE 309
S GNAVFMFRTC S EK W SF+Q SKSQ GFS +LYAWKNE
Sbjct: 245 SPGNAVFMFRTCQSVEKTW-------------SFTQVPTSSKSQSFGFSLILYAWKNE 289
>ref|NP_198167.1| putative protein; protein id: At5g28150.1, supported by cDNA:
gi_19699076 [Arabidopsis thaliana]
gi|19699077|gb|AAL90906.1| AT5g28150/T24G3_80
[Arabidopsis thaliana] gi|23308357|gb|AAN18148.1|
At5g28150/T24G3_80 [Arabidopsis thaliana]
Length = 289
Score = 48.1 bits (113), Expect = 5e-05
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = -3
Query: 476 GNAVFMFRTCLSEEKMWA-SQNLSDANVLQWSFSQRFPESKSQGLGFSHVLYAWKNE 309
GNAVFMFRTC S EK + SQ+++ N SKS GFS +LYAWK+E
Sbjct: 245 GNAVFMFRTCQSTEKSLSFSQDVTTTN------------SKSHSFGFSLILYAWKSE 289
>gb|EAA18487.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 401
Score = 33.9 bits (76), Expect = 0.96
Identities = 22/82 (26%), Positives = 35/82 (41%)
Frame = +2
Query: 146 CIEGMNLRKEPTQTKVLIFNQV*FNHILDKSQLTKRSVSIQ*MMMMMIVDFQNSTHSSKH 325
CI +N + + T+ +L N N+I +KSQ+ S+ M + S +S K
Sbjct: 182 CINELNFKNKKTEKNILDSNIFPKNYINNKSQINSSSIINDDFMYSQNTESPKSFYSQKF 241
Query: 326 TKHARNQDLATWTQETSEKKTT 391
K + D T + EK T
Sbjct: 242 KKKKKKNDNYTIENKIKEKCVT 263
>gb|AAB92357.1| triple LIM domain protein [Homo sapiens]
Length = 407
Score = 33.9 bits (76), Expect = 0.96
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -1
Query: 418 KTFLMQMCCSGLFLRGFLSPSRKVLVSRMFCMLGRMSRVLEIHNHHHHH 272
+ F C L R FL P R ++ C LGR R HNHHHHH
Sbjct: 269 RCFCCSRCGRALLGRPFL-PRRGLIFCSRACSLGR--RRHHHHNHHHHH 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,681,467
Number of Sequences: 1393205
Number of extensions: 8168154
Number of successful extensions: 29589
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 21519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26538
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
