Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020530A_C01 KMC020530A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_654866.1| hypothetical protein predicted by GeneMark [Bac... 33 2.2
emb|CAB40609.1| 5-methylcytosine-specific restriction related en... 32 3.8
gb|ZP_00102730.1| hypothetical protein [Desulfitobacterium hafni... 32 4.9
ref|NP_055647.1| TBC1 domain family, member 4; KIAA0603 gene pro... 31 8.4
>ref|NP_654866.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
A2012]
Length = 843
Score = 33.1 bits (74), Expect = 2.2
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = +3
Query: 132 DRIYFFF*LVSRNLMVIFPSSNF*ETKILSNFRMNIIGTEQNMTHTMVS-----TFYSTL 296
D + FF L ++ +++ S +TKI+ F ++ TE+N T++ + S L
Sbjct: 508 DLVNFFLSLKTKPFVILSGISGTGKTKIVQWFAESLGATEENGQFTLIPVRPDWSDSSDL 567
Query: 297 GGMIDF*GSQKLRLQISIADNQDCRKNSPILILI 398
G ++ G + R I + +N D N P +++
Sbjct: 568 LGYVNLQGEFQERPLIKVLENADANPNRPYFVVL 601
>emb|CAB40609.1| 5-methylcytosine-specific restriction related enzyme [Bacillus
cereus]
Length = 343
Score = 32.3 bits (72), Expect = 3.8
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = +3
Query: 132 DRIYFFF*LVSRNLMVIFPSSNF*ETKILSNFRMNIIGTEQNMTHTMVS-----TFYSTL 296
D I FF L ++ +++ S +TKI+ F ++ TE+N T++ + S L
Sbjct: 61 DLINFFLSLKTKPFVILSGISGTGKTKIVQWFAESLGATEENGQFTLIPVRPDWSDSSDL 120
Query: 297 GGMIDF*GSQKLRLQISIADNQDCRKNSPILILI 398
G ++ G + R I + + D NSP +++
Sbjct: 121 LGYVNLQGEFQERPLIKVLEAADANPNSPYFVVL 154
>gb|ZP_00102730.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 379
Score = 32.0 bits (71), Expect = 4.9
Identities = 18/52 (34%), Positives = 25/52 (47%), Gaps = 4/52 (7%)
Frame = +2
Query: 257 HDTYNGFYFLFYIRGDDRFLRQPE----IKASNFNCRQSRLQEKLTHSDSDL 400
HD FYF+ DDRFL P+ + N RQ+ LQ+ ++ D L
Sbjct: 317 HDVQRNFYFIDGPVNDDRFLNDPDRRLFFQKYRINTRQAYLQDTMSLLDGRL 368
>ref|NP_055647.1| TBC1 domain family, member 4; KIAA0603 gene product; TBC (Tre-2,
BUB2, CDC16) domain-containing protein; Acrg embryonic
lethality (mouse) minimal region ortholog [Homo sapiens]
gi|23822237|sp|O60343|TBC4_HUMAN TBC1 domain family
member 4 gi|7513039|pir||T00261 hypothetical protein
KIAA0603 - human gi|3043730|dbj|BAA25529.1| KIAA0603
protein [Homo sapiens]
Length = 1299
Score = 31.2 bits (69), Expect = 8.4
Identities = 19/71 (26%), Positives = 37/71 (51%), Gaps = 2/71 (2%)
Frame = +2
Query: 320 QPEIKASNFNCRQSRLQEKLTHSDSDLPRQHH*AEEKLYYPIQQLSSLTA*I--ILDHQN 493
Q E++ S+++C S EKL ++S L RQ+ EKL ++ +L + + +L +
Sbjct: 1184 QDELQESSYSCEDSETLEKLERANSQLKRQNMDLLEKLQVAHTKIQALESNLENLLTRET 1243
Query: 494 SNRKIDKALTQ 526
+ + + L Q
Sbjct: 1244 KMKSLIRTLEQ 1254
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,868,175
Number of Sequences: 1393205
Number of extensions: 7886417
Number of successful extensions: 16750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16725
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
