Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020505A_C01 KMC020505A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06455 Myb26 protein - garden pea gi|1841475|emb|CAA71992.1... 68 8e-11
pir||JQ0958 myb-related protein 305 - garden snapdragon 42 0.008
gb|AAB23527.1| Myb oncoprotein homolog {clone 305} [Antirrhinum ... 42 0.008
gb|EAA33114.1| hypothetical protein [Neurospora crassa] 38 0.12
ref|NP_186802.1| myb family transcription factor; protein id: At... 38 0.12
>pir||T06455 Myb26 protein - garden pea gi|1841475|emb|CAA71992.1| Myb26 [Pisum
sativum]
Length = 217
Score = 68.2 bits (165), Expect = 8e-11
Identities = 34/61 (55%), Positives = 38/61 (61%)
Frame = -3
Query: 600 HQGTLNLEPSSFPLSHQFPTTITTHDHPSSCCTNDNNSNNNSNINFWSMEDIWSMQLLNG 421
+QGTL P QFPT H S+CC NDNN+NN +WSMEDIWSMQLLNG
Sbjct: 168 YQGTLE------PFPTQFPTINNDHHQNSNCCANDNNNNN-----YWSMEDIWSMQLLNG 216
Query: 420 D 418
D
Sbjct: 217 D 217
>pir||JQ0958 myb-related protein 305 - garden snapdragon
Length = 205
Score = 41.6 bits (96), Expect = 0.008
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = -3
Query: 483 NNSNINFWSMEDIWSMQLLNGD 418
+ SN N WSMED WSMQLLNGD
Sbjct: 184 DQSNDNMWSMEDFWSMQLLNGD 205
>gb|AAB23527.1| Myb oncoprotein homolog {clone 305} [Antirrhinum majus=snapdragons,
J1:522, flowers, Peptide Partial, 96 aa, segment 2 of 2]
Length = 96
Score = 41.6 bits (96), Expect = 0.008
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = -3
Query: 483 NNSNINFWSMEDIWSMQLLNGD 418
+ SN N WSMED WSMQLLNGD
Sbjct: 75 DQSNDNMWSMEDFWSMQLLNGD 96
>gb|EAA33114.1| hypothetical protein [Neurospora crassa]
Length = 828
Score = 37.7 bits (86), Expect = 0.12
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 7/64 (10%)
Frame = -3
Query: 591 TLNLEPSSFPLSHQFPT---TITTHDHPS--SCCTNDNNSNNNSNINF--WSMEDIWSMQ 433
T NL PSSFP FPT + +T HP+ S TN N++NNN I WS+ Q
Sbjct: 592 TPNLIPSSFPSYFSFPTPSPSSSTSIHPTFPSTTTNSNSNNNNPRILLLPWSLSHTIPAQ 651
Query: 432 LLNG 421
+G
Sbjct: 652 AADG 655
>ref|NP_186802.1| myb family transcription factor; protein id: At3g01530.1, supported
by cDNA: 94595. [Arabidopsis thaliana]
gi|6016712|gb|AAF01538.1|AC009325_8 putative
transcription factor [Arabidopsis thaliana]
gi|26451234|dbj|BAC42719.1| putative transcription
factor [Arabidopsis thaliana] gi|28973339|gb|AAO63994.1|
putative myb family transcription factor [Arabidopsis
thaliana]
Length = 206
Score = 37.7 bits (86), Expect = 0.12
Identities = 21/64 (32%), Positives = 29/64 (44%), Gaps = 1/64 (1%)
Frame = -3
Query: 606 HHHQGTLNLEPSSFPLSHQFPTTITTHDHPSSCCTNDNNS-NNNSNINFWSMEDIWSMQL 430
H H + N + S I T + S T N SN N+W++ED+W + L
Sbjct: 139 HQHHCSGNSQSSGMTTQGSSGKAIDTAESFSQAKTTTFNVVEQQSNENYWNVEDLWPVHL 198
Query: 429 LNGD 418
LNGD
Sbjct: 199 LNGD 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,157,158
Number of Sequences: 1393205
Number of extensions: 11039037
Number of successful extensions: 93004
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 30413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68167
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
