Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020498A_C01 KMC020498A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL67666.1| hirzina [Antirrhinum majus] 119 3e-26
gb|AAO11694.1| Knotted-1-like homeobox protein H1 [Nicotiana tab... 116 2e-25
pir||T01735 homeobox protein NTH15 - common tobacco gi|3046821|d... 116 2e-25
gb|AAM47027.1| shootmeristemless-like [Petunia x hybrida] 114 5e-25
sp|O22299|HKL6_LYCES Homeobox protein knotted-1 like LET6 gi|744... 114 9e-25
>gb|AAL67666.1| hirzina [Antirrhinum majus]
Length = 353
Score = 119 bits (297), Expect = 3e-26
Identities = 57/70 (81%), Positives = 59/70 (83%), Gaps = 2/70 (2%)
Frame = -1
Query: 514 YPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATN--YYMENVMCKP 341
YPSESQK ALAESTGLD KQINNWFINQRKRHWKPSEDMQF VMDA N YYMEN++ P
Sbjct: 284 YPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAANPQYYMENILGNP 343
Query: 340 FPMDAMPMLL 311
FPMD P LL
Sbjct: 344 FPMDISPALL 353
>gb|AAO11694.1| Knotted-1-like homeobox protein H1 [Nicotiana tabacum]
Length = 343
Score = 116 bits (290), Expect = 2e-25
Identities = 56/70 (80%), Positives = 59/70 (84%), Gaps = 2/70 (2%)
Frame = -1
Query: 514 YPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDAT--NYYMENVMCKP 341
YPSESQK ALAESTGLD KQINNWFINQRKRHWKPSEDMQF VMDA +YYM+NV+ P
Sbjct: 274 YPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVLGNP 333
Query: 340 FPMDAMPMLL 311
FPMD P LL
Sbjct: 334 FPMDITPTLL 343
>pir||T01735 homeobox protein NTH15 - common tobacco gi|3046821|dbj|BAA25546.1|
homeobox gene [Nicotiana tabacum]
Length = 342
Score = 116 bits (290), Expect = 2e-25
Identities = 56/70 (80%), Positives = 59/70 (84%), Gaps = 2/70 (2%)
Frame = -1
Query: 514 YPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDAT--NYYMENVMCKP 341
YPSESQK ALAESTGLD KQINNWFINQRKRHWKPSEDMQF VMDA +YYM+NV+ P
Sbjct: 273 YPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVLGNP 332
Query: 340 FPMDAMPMLL 311
FPMD P LL
Sbjct: 333 FPMDITPTLL 342
>gb|AAM47027.1| shootmeristemless-like [Petunia x hybrida]
Length = 347
Score = 114 bits (286), Expect = 5e-25
Identities = 55/70 (78%), Positives = 59/70 (83%), Gaps = 2/70 (2%)
Frame = -1
Query: 514 YPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDAT--NYYMENVMCKP 341
YPSESQK ALAESTGLD KQINNWFINQRKRHWKPSEDMQF VMDA +YY++NV+ P
Sbjct: 278 YPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYIDNVLGNP 337
Query: 340 FPMDAMPMLL 311
FPMD P LL
Sbjct: 338 FPMDMTPTLL 347
>sp|O22299|HKL6_LYCES Homeobox protein knotted-1 like LET6 gi|7446258|pir||T04317
homeobox protein LeT6, class I knotted-like - tomato
gi|2529701|gb|AAC49917.1| class I knotted-like
homeodomain protein [Lycopersicon esculentum]
Length = 355
Score = 114 bits (284), Expect = 9e-25
Identities = 55/70 (78%), Positives = 58/70 (82%), Gaps = 2/70 (2%)
Frame = -1
Query: 514 YPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDAT--NYYMENVMCKP 341
YPSESQK ALAESTGLD KQINNWFINQRKRHWKPSEDMQF VMDA +YYM+NV+
Sbjct: 286 YPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVLANH 345
Query: 340 FPMDAMPMLL 311
FPMD P LL
Sbjct: 346 FPMDMTPSLL 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,384,826
Number of Sequences: 1393205
Number of extensions: 8253885
Number of successful extensions: 21875
Number of sequences better than 10.0: 626
Number of HSP's better than 10.0 without gapping: 21098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21844
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
