Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020487A_C01 KMC020487A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB40374.1| Starch synthase isoform SS III [Vigna unguiculata] 63 2e-09
pir||T07663 soluble starch synthase (EC 2.4.1.-) SSIII, precurso... 38 0.077
sp|Q43846|UGS4_SOLTU Soluble glycogen [starch] synthase, chlorop... 37 0.10
ref|NP_250063.1| hypothetical protein [Pseudomonas aeruginosa PA... 33 1.9
ref|NP_569153.1| poplyprotein [citrus yellow mosaic virus] gi|16... 32 5.5
>emb|CAB40374.1| Starch synthase isoform SS III [Vigna unguiculata]
Length = 1147
Score = 62.8 bits (151), Expect = 2e-09
Identities = 44/88 (50%), Positives = 50/88 (56%)
Frame = +1
Query: 247 MEMSSLPLNLKTTFPDRGGGCLKLPPFSGFFLRHPVTASTSYQSSGCKAGWGGFCVKASS 426
MEMS L LN KT F C KL PFS V +S+ + + CV AS
Sbjct: 1 MEMS-LQLNYKTPF------CFKLTPFS-------VLTPSSWHKASIRVS----CVNAS- 41
Query: 427 ADFSRRRQQKKVSIARPKDSAPKGFAPK 510
ADFSR+RQQKK SIA+PK S PKGF PK
Sbjct: 42 ADFSRKRQQKKSSIAKPKGSNPKGFVPK 69
>pir||T07663 soluble starch synthase (EC 2.4.1.-) SSIII, precursor - potato
gi|1911166|emb|CAA64173.1| soluble-starch-synthase
[Solanum tuberosum]
Length = 1230
Score = 37.7 bits (86), Expect = 0.077
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +1
Query: 310 LKLPPFSGFFLRHPVTA----STSYQSSGCKAGWG-GFCVKASSADFSRRRQQKKVSIAR 474
LK+ PF GF + H T+ S+S++ G G FC S R+++KVS R
Sbjct: 23 LKIKPFLGF-VSHGTTSLSVQSSSWRKDGMVTGVSFPFCANLSG------RRRRKVSTTR 75
Query: 475 PKDSAPKGFAPK 510
+ S+PKGF P+
Sbjct: 76 SQGSSPKGFVPR 87
>sp|Q43846|UGS4_SOLTU Soluble glycogen [starch] synthase, chloroplast precursor (SS III)
gi|1200154|emb|CAA65065.1| glycogen (starch) synthase
[Solanum tuberosum]
Length = 1230
Score = 37.4 bits (85), Expect = 0.10
Identities = 26/67 (38%), Positives = 37/67 (54%)
Frame = +1
Query: 310 LKLPPFSGFFLRHPVTASTSYQSSGCKAGWGGFCVKASSADFSRRRQQKKVSIARPKDSA 489
LK+ P GF + H T+ + SS K G + A+FS RR+ +KVS R + S+
Sbjct: 23 LKIKPILGF-VSHGTTSLSVQSSSWRKDGMVTGVSFSICANFSGRRR-RKVSTPRSQGSS 80
Query: 490 PKGFAPK 510
PKGF P+
Sbjct: 81 PKGFVPR 87
>ref|NP_250063.1| hypothetical protein [Pseudomonas aeruginosa PA01]
gi|11349182|pir||A83475 hypothetical protein PA1372
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9947315|gb|AAG04761.1|AE004566_7 hypothetical protein
[Pseudomonas aeruginosa PAO1]
Length = 711
Score = 33.1 bits (74), Expect = 1.9
Identities = 17/57 (29%), Positives = 26/57 (44%)
Frame = +1
Query: 337 FLRHPVTASTSYQSSGCKAGWGGFCVKASSADFSRRRQQKKVSIARPKDSAPKGFAP 507
F RH + + + GWGG + AD RR + S + +D+AP+G P
Sbjct: 272 FYRHYKEIDPDWNNIHIRHGWGGSNSSGTYADACRRSGRMPRSYSSARDAAPRGVEP 328
>ref|NP_569153.1| poplyprotein [citrus yellow mosaic virus]
gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
yellow mosaic virus]
Length = 1983
Score = 31.6 bits (70), Expect = 5.5
Identities = 19/62 (30%), Positives = 28/62 (44%)
Frame = +1
Query: 310 LKLPPFSGFFLRHPVTASTSYQSSGCKAGWGGFCVKASSADFSRRRQQKKVSIARPKDSA 489
L+LPP F + ++ GC GWGG C K A + R ++ + A K +
Sbjct: 1695 LELPPADCFII---------IETDGCMDGWGGVC-KWKVAQYDPRSSERVCAYASGKFNP 1744
Query: 490 PK 495
PK
Sbjct: 1745 PK 1746
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,923,730
Number of Sequences: 1393205
Number of extensions: 8715833
Number of successful extensions: 16241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16239
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
