Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020486A_C01 KMC020486A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00077774.1| hypothetical protein [Methanosarcina barkeri] 48 7e-05
ref|NP_671872.1| unknown protein; protein id: At2g22795.1 [Arabi... 47 1e-04
gb|ZP_00002551.1| hypothetical protein [Nitrosomonas europaea] 47 2e-04
gb|EAA18343.1| chloroquine resistance marker protein, putative [... 46 3e-04
ref|XP_220903.1| similar to nuclear domain 10 protein [Homo sapi... 45 6e-04
>gb|ZP_00077774.1| hypothetical protein [Methanosarcina barkeri]
Length = 656
Score = 48.1 bits (113), Expect = 7e-05
Identities = 34/132 (25%), Positives = 63/132 (46%), Gaps = 10/132 (7%)
Frame = +2
Query: 182 SNDLANSEKNSDNNVKDSEFQANKDLSNSKAEPDKGLPAAESEKPASDGDA---NSGTPN 352
++D S+ +SD+ DS + D NS PD G + +SD D+ NS + +
Sbjct: 208 NSDSDLSDGSSDSGSNDSNSDSGLDDGNSDTSPDDGNSDSGPNNGSSDSDSNDKNSDSGS 267
Query: 353 HELNNTEELPAAETETPVSGG-------DANAGTSNHELNNTEELPAAESEAPASGGDAN 511
++ N+ L + T G D N+GTS+ + N+T + +S S GD++
Sbjct: 268 NDSNSDSSLDNGNSSTSPDAGNSDSGLDDGNSGTSSDDKNSTSDSDNVDS----SKGDSD 323
Query: 512 AGTPNHELNNTE 547
+G+ + + N++
Sbjct: 324 SGSGDSDTKNSD 335
Score = 44.3 bits (103), Expect = 0.001
Identities = 36/138 (26%), Positives = 66/138 (47%)
Frame = +2
Query: 137 TPDVKNVPVSTDFQPSNDLANSEKNSDNNVKDSEFQANKDLSNSKAEPDKGLPAAESEKP 316
+PD N D SN+ + + NSD+++ D + + SNS D GL S+
Sbjct: 185 SPDDGNSDSGLDDGNSNN-SPDDGNSDSDLSDGSSDSGSNDSNS----DSGLDDGNSDTS 239
Query: 317 ASDGDANSGTPNHELNNTEELPAAETETPVSGGDANAGTSNHELNNTEELPAAESEAPAS 496
DG+++SG PN N + + + + + D+N+ +S N++ A S++
Sbjct: 240 PDDGNSDSG-PN---NGSSDSDSNDKNSDSGSNDSNSDSSLDNGNSSTSPDAGNSDSGLD 295
Query: 497 GGDANAGTPNHELNNTEE 550
D N+GT + + N+T +
Sbjct: 296 --DGNSGTSSDDKNSTSD 311
Score = 43.1 bits (100), Expect = 0.002
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Frame = +2
Query: 164 STDFQPSNDLANSEKNSDNNVKDSEFQANKDLSNSKAEPD-----KGLPAAESEKPASDG 328
S+D +DL S+ +SD+ DS + D NS PD GL S DG
Sbjct: 132 SSDSSSDSDL--SDGSSDSGSSDSSSDSGLDDGNSNNSPDDGNSDSGLDDGNSNNSPDDG 189
Query: 329 DANSGTPNHELNNTEELPAAETETPVSGGDANAGTSNHELNNTEELPAAESEAPASGGDA 508
+++SG + NN+ + +++ +S G +++G +++ N+ L S+ G++
Sbjct: 190 NSDSGLDDGNSNNSPD--DGNSDSDLSDGSSDSG--SNDSNSDSGLDDGNSDTSPDDGNS 245
Query: 509 NAGTPN 526
++G N
Sbjct: 246 DSGPNN 251
Score = 40.4 bits (93), Expect = 0.014
Identities = 26/124 (20%), Positives = 56/124 (44%), Gaps = 7/124 (5%)
Frame = +2
Query: 182 SNDLANSEKNSDNNVKDSEFQANKDLSNSKAEPDKGLPAAESEKPASDGDANSGTPNHEL 361
S+D +S+ +SD+++ D N D +S + D L S+ +SD ++SG +
Sbjct: 109 SSDSGSSDSSSDSDLSDG----NSDSDSSDSSSDSDLSDGSSDSGSSDSSSDSGLDDGNS 164
Query: 362 NNTEE-------LPAAETETPVSGGDANAGTSNHELNNTEELPAAESEAPASGGDANAGT 520
NN+ + L + G++++G + NN+ + ++S+ D+ +
Sbjct: 165 NNSPDDGNSDSGLDDGNSNNSPDDGNSDSGLDDGNSNNSPDDGNSDSDLSDGSSDSGSND 224
Query: 521 PNHE 532
N +
Sbjct: 225 SNSD 228
Score = 31.6 bits (70), Expect = 6.7
Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Frame = +2
Query: 182 SNDLANSEKNSDNNVKDSEFQANKDLSNSKAEPDKGLPAAESEKPASDG----DANSGTP 349
S+D +S +S ++ D +S D G + S+ SDG D++ +
Sbjct: 78 SSDTGDSVSDSGSSDTGDSDTDKVDSGSSDGSSDSGSSDSSSDSDLSDGNSDSDSSDSSS 137
Query: 350 NHELNNTEELPAAETETPVSG-GDANAGTSNHELNNTEELPAAESEAPASGGDANAGTPN 526
+ +L++ + + SG D N+ S + N+ L S G++++G +
Sbjct: 138 DSDLSDGSSDSGSSDSSSDSGLDDGNSNNSPDDGNSDSGLDDGNSNNSPDDGNSDSGLDD 197
Query: 527 HELNNTEE 550
NN+ +
Sbjct: 198 GNSNNSPD 205
>ref|NP_671872.1| unknown protein; protein id: At2g22795.1 [Arabidopsis thaliana]
Length = 734
Score = 47.4 bits (111), Expect = 1e-04
Identities = 44/154 (28%), Positives = 62/154 (39%), Gaps = 2/154 (1%)
Frame = +2
Query: 95 QDKMVTVEEDKVAVTPDVKNVPVSTDFQPSNDLANS--EKNSDNNVKDSEFQANKDLSNS 268
+D + V E A KNV S + +D N E +N K+SE + + SNS
Sbjct: 67 KDLIPRVVEVDEAEDEGSKNVVESFNSGNGDDKENEIVEGGEENKEKESEGIVSNEDSNS 126
Query: 269 KAEPDKGLPAAESEKPASDGDANSGTPNHELNNTEELPAAETETPVSGGDANAGTSNHEL 448
+ E K E + D GT +E + TEE E + N GT +E
Sbjct: 127 EIEEKKDSGGVEESEVEEKRDNGGGTEENEKSGTEESEVEERKD-------NGGTEENEK 179
Query: 449 NNTEELPAAESEAPASGGDANAGTPNHELNNTEE 550
+ TEE E + N GT +E + TEE
Sbjct: 180 SGTEESEVEERK-------DNGGTEENEKSGTEE 206
Score = 38.5 bits (88), Expect = 0.055
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 1/160 (0%)
Frame = +2
Query: 74 SAGRYIYQDKMVTVEEDKVAVTPDVKNVPVSTDFQPSNDLANSEKNSDNNVKDSEFQANK 253
S G +D +EE K D V S + ++ +E+N + ++SE + K
Sbjct: 115 SEGIVSNEDSNSEIEEKK-----DSGGVEESEVEEKRDNGGGTEENEKSGTEESEVEERK 169
Query: 254 DLSNSKAEPDKGLPAAESEKPASDGDANSGTPNHELNNTEELPAAETETPVSGGDANAGT 433
D ++ G +E E+ +G GT +E + TEE E + N GT
Sbjct: 170 DNGGTEENEKSGTEESEVEERKDNG----GTEENEKSGTEESEVEERK-------ENGGT 218
Query: 434 SNHELNNTEELPAAESEAPASGGDANAGT-PNHELNNTEE 550
+E + +EE E + N GT + E + TEE
Sbjct: 219 EENEKSGSEESEVEEKK-------DNGGTEESREKSGTEE 251
>gb|ZP_00002551.1| hypothetical protein [Nitrosomonas europaea]
Length = 465
Score = 46.6 bits (109), Expect = 2e-04
Identities = 37/149 (24%), Positives = 68/149 (44%), Gaps = 4/149 (2%)
Frame = +2
Query: 110 TVEEDKVAV-TPDVKNVPVSTDFQPSNDLANSEKNSDNNVKDSEFQANKDLSNS-KAEPD 283
TV+ + + T D + +T SN+ + +S +N +++ AN D +NS KA D
Sbjct: 222 TVDSNNTSTKTSDSSDNSTNTKTVDSNNTSTKTSDSSDNSTNTKTVANTDSNNSGKASAD 281
Query: 284 KGLPAAESEKPASDGDANSGTPNHEL--NNTEELPAAETETPVSGGDANAGTSNHELNNT 457
AA + AS ++NS T + + NN+ +A+ + S + TS++ N+
Sbjct: 282 DKSAAANNNSTASVDNSNSSTNSKDSNDNNSRASASAKGDGSASANGGSTATSDNSDNSD 341
Query: 458 EELPAAESEAPASGGDANAGTPNHELNNT 544
+A+ + AS A T +N+
Sbjct: 342 NSSASAKGQGNASANGGGAATVTDSSDNS 370
Score = 31.6 bits (70), Expect = 6.7
Identities = 28/134 (20%), Positives = 52/134 (37%), Gaps = 9/134 (6%)
Frame = +2
Query: 137 TPDVKNVPVSTDFQPSNDLANSEKNSDNN---VKDSEFQANK------DLSNSKAEPDKG 289
T D N +T S+D + + K D+N K S+ N D +N+ +
Sbjct: 176 TVDASNSSTNTKTSDSSDNSTNTKTVDSNNTSTKTSDSSDNSTNTKTVDSNNTSTKTSDS 235
Query: 290 LPAAESEKPASDGDANSGTPNHELNNTEELPAAETETPVSGGDANAGTSNHELNNTEELP 469
+ + K + ++ T + N+T A T++ + G A+A + NN
Sbjct: 236 SDNSTNTKTVDSNNTSTKTSDSSDNSTNTKTVANTDSN-NSGKASADDKSAAANNNSTAS 294
Query: 470 AAESEAPASGGDAN 511
S + + D+N
Sbjct: 295 VDNSNSSTNSKDSN 308
>gb|EAA18343.1| chloroquine resistance marker protein, putative [Plasmodium yoelii
yoelii]
Length = 3604
Score = 45.8 bits (107), Expect = 3e-04
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Frame = +2
Query: 152 NVPVSTDFQPSNDLANSE-KNSDNNVKDSEFQANKDLSNSKAEPDKGLPAAESEKPASDG 328
N P D N++ NSE KN D NV DS + N D++N+ P ++D
Sbjct: 312 NSPNINDQTNVNEIDNSENKNHDINVNDSNTENNTDVTNNNELPK-----------SNDN 360
Query: 329 DANSGTPNHELNNTEELPAAETETPVSGGDANAGTSNHELNNTEELPAAESEAPASGGDA 508
+ + + +++ NN + L +E + G + N + E NNT +++E S +
Sbjct: 361 ECSGNSNDNDNNNVDTLDKSENDDNAKGSEINDLQNGSEKNNTPVSNRSQNETFLSSENK 420
Query: 509 N 511
N
Sbjct: 421 N 421
Score = 37.7 bits (86), Expect = 0.093
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 13/144 (9%)
Frame = +2
Query: 152 NVPVSTDFQPSNDLAN----SEKNSDNNVKDSEFQANK--DLSNSKAEPDKGLPAAESEK 313
N ++T F ++ AN S NSD N+ + + DL + P +
Sbjct: 261 NKNINTQFGSTDTDANMFNSSIDNSDKNIVINNLNTDNSNDLIQHEHTEKSNSPNINDQT 320
Query: 314 PASDGDANSGTPNHELN----NTEELPAA--ETETPVSGGDANAGTSN-HELNNTEELPA 472
++ D NS NH++N NTE E P S + +G SN ++ NN + L
Sbjct: 321 NVNEID-NSENKNHDINVNDSNTENNTDVTNNNELPKSNDNECSGNSNDNDNNNVDTLDK 379
Query: 473 AESEAPASGGDANAGTPNHELNNT 544
+E++ A G + N E NNT
Sbjct: 380 SENDDNAKGSEINDLQNGSEKNNT 403
>ref|XP_220903.1| similar to nuclear domain 10 protein [Homo sapiens] [Rattus
norvegicus]
Length = 974
Score = 45.1 bits (105), Expect = 6e-04
Identities = 45/181 (24%), Positives = 79/181 (42%), Gaps = 13/181 (7%)
Frame = +2
Query: 47 RSQAQSPSLSAGRYIYQDKMVTVEEDKVAVTPDVKNVPVSTDFQ-PSNDLANSE----KN 211
R Q +S S + + Q ++V +++ + + D ++ D N N+E KN
Sbjct: 261 RLQKESNSQLSSSFTEQARVVALQQKLININIDYNHLQQDNDILCGENRRLNTEICLLKN 320
Query: 212 SDNNVKDSEFQANKDLSNSKAEPDKGLPAAESEKPASDGDANSGTPNHELNNTEELPAA- 388
+ ++ S ANKD+S+++ AAE E P DA P +++ E P+A
Sbjct: 321 ENKALRSS--LANKDVSSNER-------AAEPEVPTPQVDAEPEAPTPQVDAEPEDPSAQ 371
Query: 389 ---ETETPVSGGDANAGTSNHELNNTEELPA----AESEAPASGGDANAGTPNHELNNTE 547
E E P + DA + + + E+P+ AE E P+ DA P+ + +
Sbjct: 372 ADVEPEVPSAQADAEPEVPSAQADAEPEVPSAQADAEPEVPSPQADAEPEVPSPQADAEP 431
Query: 548 E 550
E
Sbjct: 432 E 432
Score = 44.3 bits (103), Expect = 0.001
Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Frame = +2
Query: 107 VTVEEDKVAVTPDVKNVPVSTDFQPSNDLANSEKNSDNNVKDSEFQANKDLSNSKAEPDK 286
V E + + DV+ S ++ +++ +++ V ++ A ++ + +A+ +
Sbjct: 361 VDAEPEDPSAQADVEPEVPSAQADAEPEVPSAQADAEPEVPSAQADAEPEVPSPQADAEP 420
Query: 287 GLPA----AESEKPASDGDANSGTPNHELNNTEELPA----AETETPVSGGDANAGTSNH 442
+P+ AE E P++ DA + P+ + + E+P+ AE E P + DA +
Sbjct: 421 EVPSPQADAEPEVPSAQADAETEVPS-QADAEPEVPSPQADAEPEVPSAQADAEPEVPSP 479
Query: 443 ELNNTEELPA----AESEAPASGGDANAGTPNHELNNTEE 550
++ E+P+ AE EAP++ DA P+ + + E
Sbjct: 480 HVDAEPEVPSPHIDAEPEAPSAQADAEPEAPSAQADAEPE 519
Score = 41.2 bits (95), Expect = 0.008
Identities = 41/175 (23%), Positives = 74/175 (41%), Gaps = 8/175 (4%)
Frame = +2
Query: 50 SQAQSPSLSAGRYIYQDKMVTVEEDKVAVTPDVKNVPVSTDFQPSNDLANSEKNSDNNVK 229
++ ++PS A D V V P+V + + + + A++E + +
Sbjct: 505 AEPEAPSAQA------DAEPEVPSPHVDAEPEVPSAQADAEPEVPSAQADAEPEAPSAQA 558
Query: 230 DSEFQANKDLSNSKAEPDK-GLPAAESEKPASDGDANSGTPNHELNNTEELPAA---ETE 397
D E +A + + AEP+ AE E P++ DA P+ + + E P+A E E
Sbjct: 559 DVEPEAPS--AQADAEPEAPSAQVAEPEVPSAQADAEPEVPSAQADAEPEAPSAQVAEPE 616
Query: 398 TPVSGGDANAGTSNHELNNTEELPA----AESEAPASGGDANAGTPNHELNNTEE 550
P + DA + + + E+P+ AE E P + DA P+ + + E
Sbjct: 617 VPSAQADAEPEVPSPQADAEPEVPSPQADAEPEVPPAQVDAEPEVPSPQADAEPE 671
Score = 38.9 bits (89), Expect = 0.042
Identities = 33/143 (23%), Positives = 63/143 (43%), Gaps = 7/143 (4%)
Frame = +2
Query: 140 PDVKNVPVSTDFQPSNDLANSEKNSDNNVKDSEFQANKDLSNSKAEPDKGLPAAESEKPA 319
P+V + V + + + ++E + + D+E +A ++++ E AE E P+
Sbjct: 474 PEVPSPHVDAEPEVPSPHIDAEPEAPSAQADAEPEAPSAQADAEPEVPSPHVDAEPEVPS 533
Query: 320 SDGDANSGTPNHELNNTEELPAA----ETETPVSGGDANAGTSNHELNNTEELPA---AE 478
+ DA P+ + + E P+A E E P + DA + ++ E A AE
Sbjct: 534 AQADAEPEVPSAQADAEPEAPSAQADVEPEAPSAQADAEPEAPSAQVAEPEVPSAQADAE 593
Query: 479 SEAPASGGDANAGTPNHELNNTE 547
E P++ DA P+ ++ E
Sbjct: 594 PEVPSAQADAEPEAPSAQVAEPE 616
Score = 38.5 bits (88), Expect = 0.055
Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Frame = +2
Query: 140 PDVKNVPVSTDFQPSNDLANSEKNSDNNVKDSEFQANKDLSNSKAEPDKGLPAAESEKPA 319
P+V + + + + A++E + D+E + +++ E AE E P+
Sbjct: 452 PEVPSPQADAEPEVPSAQADAEPEVPSPHVDAEPEVPSPHIDAEPEAPSAQADAEPEAPS 511
Query: 320 SDGDANSGTPNHELNNTEELPA----AETETPVSGGDANAGTSNHELNNTEELPAAESEA 487
+ DA P+ ++ E+P+ AE E P + DA + + + E P+A+++A
Sbjct: 512 AQADAEPEVPSPHVDAEPEVPSAQADAEPEVPSAQADAEPEAPSAQADVEPEAPSAQADA 571
Query: 488 PASGGDANAGTP 523
A P
Sbjct: 572 EPEAPSAQVAEP 583
Score = 38.1 bits (87), Expect = 0.072
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 17/163 (10%)
Frame = +2
Query: 113 VEEDKVAVTPDVKNVPVSTDFQPSNDLANSEKNSDNNVKDSEFQANKDLSNSKAEPDKGL 292
V V P+V + + + + + A++E + + D+E + +++ E
Sbjct: 476 VPSPHVDAEPEVPSPHIDAEPEAPSAQADAEPEAPSAQADAEPEVPSPHVDAEPEVPSAQ 535
Query: 293 PAAESEKPASDGDANSGTPNHELNNTEELPA--------------AETETPVSGGDANAG 430
AE E P++ DA P+ + + E P+ AE E P + DA
Sbjct: 536 ADAEPEVPSAQADAEPEAPSAQADVEPEAPSAQADAEPEAPSAQVAEPEVPSAQADAEPE 595
Query: 431 TSNHELNNTEELPA---AESEAPASGGDANAGTPNHELNNTEE 550
+ + + E P+ AE E P++ DA P+ + + E
Sbjct: 596 VPSAQADAEPEAPSAQVAEPEVPSAQADAEPEVPSPQADAEPE 638
Score = 37.4 bits (85), Expect = 0.12
Identities = 31/144 (21%), Positives = 61/144 (41%), Gaps = 7/144 (4%)
Frame = +2
Query: 140 PDVKNVPVSTDFQPSNDLANSEKNSDNNVKDSEFQANKDLSNSKAEPDKGLPAAESEKPA 319
P+V + + + + ++E + D+E +A ++++ E AE E P+
Sbjct: 463 PEVPSAQADAEPEVPSPHVDAEPEVPSPHIDAEPEAPSAQADAEPEAPSAQADAEPEVPS 522
Query: 320 SDGDANSGTPNHELNNTEELPA----AETETPVSGGDANAGTSNHELNNTEELPA---AE 478
DA P+ + + E+P+ AE E P + D + + + E P+ AE
Sbjct: 523 PHVDAEPEVPSAQADAEPEVPSAQADAEPEAPSAQADVEPEAPSAQADAEPEAPSAQVAE 582
Query: 479 SEAPASGGDANAGTPNHELNNTEE 550
E P++ DA P+ + + E
Sbjct: 583 PEVPSAQADAEPEVPSAQADAEPE 606
Score = 35.4 bits (80), Expect = 0.46
Identities = 26/122 (21%), Positives = 55/122 (44%), Gaps = 4/122 (3%)
Frame = +2
Query: 158 PVSTDFQPSNDLANSEKNSDNNVKDSEFQANKDLSNSK--AEPDKGLP--AAESEKPASD 325
P D +P ++ + + +++ V + A ++S+ + AEP+ P AAE E P+
Sbjct: 652 PAQVDAEP--EVPSPQADAEPEVSSPQAAAEPEVSSPQVDAEPEVSSPQAAAEPEVPSPQ 709
Query: 326 GDANSGTPNHELNNTEELPAAETETPVSGGDANAGTSNHELNNTEELPAAESEAPASGGD 505
DA P+ + + E+P+ + + A + E+ + + P +E + G
Sbjct: 710 ADAEPEVPSPQADAEPEVPSPQVDAESEAPSPQAAPES-EVPSPQAAPESEVPSAQRAGS 768
Query: 506 AN 511
+N
Sbjct: 769 SN 770
Score = 33.9 bits (76), Expect = 1.3
Identities = 30/127 (23%), Positives = 53/127 (41%)
Frame = +2
Query: 113 VEEDKVAVTPDVKNVPVSTDFQPSNDLANSEKNSDNNVKDSEFQANKDLSNSKAEPDKGL 292
V + A P+V + V + + S+ A +E + D+E + ++++ E
Sbjct: 672 VSSPQAAAEPEVSSPQVDAEPEVSSPQAAAEPEVPSPQADAEPEVPSPQADAEPEVPSPQ 731
Query: 293 PAAESEKPASDGDANSGTPNHELNNTEELPAAETETPVSGGDANAGTSNHELNNTEELPA 472
AESE P+ S P+ + E+P+A+ AG+SN L +E
Sbjct: 732 VDAESEAPSPQAAPESEVPSPQAAPESEVPSAQ----------RAGSSNPLLWECDEDSY 781
Query: 473 AESEAPA 493
E+ PA
Sbjct: 782 TENFQPA 788
Score = 32.0 bits (71), Expect = 5.1
Identities = 24/117 (20%), Positives = 54/117 (45%), Gaps = 4/117 (3%)
Frame = +2
Query: 188 DLANSEKNSDNNVKDSEFQANKDLSNSKAEPDKGLPAAESEKPASDGDANSGTPNHELNN 367
++ + + +++ V ++ A ++ + +A+ + P S + A++ + +S + E
Sbjct: 638 EVPSPQADAEPEVPPAQVDAEPEVPSPQADAE---PEVSSPQAAAEPEVSSPQVDAEPEV 694
Query: 368 TEELPAAETETPVSGGDANAGTSNHELNNTEELPA----AESEAPASGGDANAGTPN 526
+ AAE E P DA + + + E+P+ AESEAP+ + P+
Sbjct: 695 SSPQAAAEPEVPSPQADAEPEVPSPQADAEPEVPSPQVDAESEAPSPQAAPESEVPS 751
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,515,422
Number of Sequences: 1393205
Number of extensions: 11409407
Number of successful extensions: 60881
Number of sequences better than 10.0: 915
Number of HSP's better than 10.0 without gapping: 48822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58665
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
