Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020485A_C01 KMC020485A_c01
(458 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL65813.1|AF346715_3 AgrC [Staphylococcus capitis subsp. cap... 32 3.1
ref|NP_197816.1| putative protein; protein id: At5g24280.1 [Arab... 30 9.1
gb|EAA02639.1| ebiP291 [Anopheles gambiae str. PEST] 30 9.1
>gb|AAL65813.1|AF346715_3 AgrC [Staphylococcus capitis subsp. capitis]
Length = 224
Score = 32.0 bits (71), Expect = 3.1
Identities = 27/94 (28%), Positives = 48/94 (50%), Gaps = 4/94 (4%)
Frame = +1
Query: 187 FICFKCEACLCAFVRKLVYMKLLISPLIHNQKRTTIEGSGKGLTTWSIVCSLTVTF---- 354
F+ F C A + A++ K ++ KL S L N+K TI +IV L+ F
Sbjct: 115 FVAFVCIAFILAYLLKFLFNKLTQSYLSLNKKYITI---------ITIVLLLSFVFFYII 165
Query: 355 TQETVSSVDS*SLYKSHSLSAMFWMSHITIICTS 456
+Q +S+ DS SLY ++ + ++S + +I ++
Sbjct: 166 SQTDMSASDSLSLYAILLVALIVFLSVVILIMST 199
>ref|NP_197816.1| putative protein; protein id: At5g24280.1 [Arabidopsis thaliana]
gi|10177088|dbj|BAB10394.1|
emb|CAB66404.1~gene_id:MOP9.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 1634
Score = 30.4 bits (67), Expect = 9.1
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 183 RFHLLQM*SLSMCLCKETSLYETADFTADS*SKKDNHRGFREGTDHMVYCMQPYRDFYTR 362
+F +L + S S+ L ETSL + A +T D K + R + + C+Q R+ +
Sbjct: 1268 QFGVLAIRSSSLALSSETSLMDMAQYTEDLKEKINIDEERRVELEERLKCLQAQREHAEQ 1327
Query: 363 NC 368
C
Sbjct: 1328 EC 1329
>gb|EAA02639.1| ebiP291 [Anopheles gambiae str. PEST]
Length = 261
Score = 30.4 bits (67), Expect = 9.1
Identities = 15/39 (38%), Positives = 25/39 (63%)
Frame = -2
Query: 325 TMWSVPSRNPRWLSFFDYESAVKSAVSYKLVSLQRHIDK 209
T +SV + + R+ SF Y S A+SY L+++Q+ +DK
Sbjct: 57 TNFSVITNDGRFYSFNVYYSGYPEALSYDLLTMQKAVDK 95
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 366,090,973
Number of Sequences: 1393205
Number of extensions: 7023434
Number of successful extensions: 13472
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13468
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
