Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020484A_C01 KMC020484A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H96665 protein F22C12.10 [imported] - Arabidopsis thaliana ... 44 0.001
ref|NP_176596.1| hypothetical protein; protein id: At1g64140.1 [... 38 0.12
ref|NP_508652.1| Quiescin Q6 (76.6 kD) [Caenorhabditis elegans] ... 32 5.2
ref|NP_508653.1| Quiescin Q6 (70.0 kD) [Caenorhabditis elegans] ... 32 5.2
ref|NP_508654.1| Thioredoxin family member [Caenorhabditis elega... 32 5.2
>pir||H96665 protein F22C12.10 [imported] - Arabidopsis thaliana
gi|6692098|gb|AAF24563.1|AC007764_5 F22C12.10
[Arabidopsis thaliana]
Length = 646
Score = 44.3 bits (103), Expect = 0.001
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = +3
Query: 459 MDTRFQHLGFPVNNSANAFKILNNSMQVEGSGLDYYAADTVLRLDSPGS 605
M +RFQ++ F N+S+N++KIL S+QVE AADT LRLDS S
Sbjct: 1 MHSRFQNIAFAGNSSSNSYKILGRSLQVEVP----EAADTTLRLDSLAS 45
>ref|NP_176596.1| hypothetical protein; protein id: At1g64140.1 [Arabidopsis
thaliana]
Length = 658
Score = 37.7 bits (86), Expect = 0.12
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +3
Query: 471 FQHLGFPVNNSANAFKILNNSMQVEGSGLDYYAADTVLRLDSPGS 605
++++ F N+S+N++KIL S+QVE AADT LRLDS S
Sbjct: 17 YKNIAFAGNSSSNSYKILGRSLQVEVP----EAADTTLRLDSLAS 57
>ref|NP_508652.1| Quiescin Q6 (76.6 kD) [Caenorhabditis elegans]
gi|14670165|gb|AAK72057.1|U39646_3 Hypothetical protein
F47B7.2b [Caenorhabditis elegans]
Length = 678
Score = 32.3 bits (72), Expect = 5.2
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 2/53 (3%)
Frame = +2
Query: 20 AHTSTISTVKQ--HNTRASPRLFILSPFRVAFLSSLSLSLARFPNPRRSQSNQ 172
AHT T+ KQ HNT P + +L PFR LS S + ++ NQ
Sbjct: 425 AHTITVEAYKQEKHNTAFKPVIDVLEPFRAFIFHFLSCSECAQNFTKEAEKNQ 477
>ref|NP_508653.1| Quiescin Q6 (70.0 kD) [Caenorhabditis elegans]
gi|14670166|gb|AAK72058.1|U39646_4 Hypothetical protein
F47B7.2c [Caenorhabditis elegans]
Length = 624
Score = 32.3 bits (72), Expect = 5.2
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 2/53 (3%)
Frame = +2
Query: 20 AHTSTISTVKQ--HNTRASPRLFILSPFRVAFLSSLSLSLARFPNPRRSQSNQ 172
AHT T+ KQ HNT P + +L PFR LS S + ++ NQ
Sbjct: 425 AHTITVEAYKQEKHNTAFKPVIDVLEPFRAFIFHFLSCSECAQNFTKEAEKNQ 477
>ref|NP_508654.1| Thioredoxin family member [Caenorhabditis elegans]
gi|7503640|pir||T16384 hypothetical protein F47B7.2 -
Caenorhabditis elegans gi|1049356|gb|AAA80371.1|
Hypothetical protein F47B7.2a [Caenorhabditis elegans]
Length = 623
Score = 32.3 bits (72), Expect = 5.2
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 2/53 (3%)
Frame = +2
Query: 20 AHTSTISTVKQ--HNTRASPRLFILSPFRVAFLSSLSLSLARFPNPRRSQSNQ 172
AHT T+ KQ HNT P + +L PFR LS S + ++ NQ
Sbjct: 425 AHTITVEAYKQEKHNTAFKPVIDVLEPFRAFIFHFLSCSECAQNFTKEAEKNQ 477
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,448,028
Number of Sequences: 1393205
Number of extensions: 10804722
Number of successful extensions: 26196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26106
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
