Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020482A_C01 KMC020482A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_485358.1| type 4 prepilin peptidase [Nostoc sp. PCC 7120]... 32 3.6
ref|NP_069852.1| conserved hypothetical protein [Archaeoglobus f... 32 4.8
gb|AAM28777.1| hunchback [Drosophila biarmipes] 31 6.2
>ref|NP_485358.1| type 4 prepilin peptidase [Nostoc sp. PCC 7120]
gi|25290075|pir||AH1970 type 4 prepilin peptidase
[imported] - Nostoc sp. (strain PCC 7120)
gi|17130662|dbj|BAB73272.1| type 4 prepilin peptidase
[Nostoc sp. PCC 7120]
Length = 269
Score = 32.0 bits (71), Expect = 3.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = -1
Query: 133 FSSVAVKVWIWLKGSCQWL-----FYYCMVECCILVVFLIVF 23
+ +V V WIWLKG C++ Y +VE ++FL VF
Sbjct: 54 YDNVPVLGWIWLKGRCRFCKNPISIRYPVVEAVTGIIFLCVF 95
>ref|NP_069852.1| conserved hypothetical protein [Archaeoglobus fulgidus]
gi|7483076|pir||C69377 conserved hypothetical protein
AF1019 - Archaeoglobus fulgidus
gi|2649575|gb|AAB90223.1| conserved hypothetical protein
[Archaeoglobus fulgidus DSM 4304]
Length = 459
Score = 31.6 bits (70), Expect = 4.8
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 233 KLMYIPSL*NSTRLKFKRTAYEGRRYYPLERNI 331
K+ +IP +S RLKFK + Y GR Y+ +E+ +
Sbjct: 186 KIKFIP---DSNRLKFKISFYNGRNYHEIEKEV 215
>gb|AAM28777.1| hunchback [Drosophila biarmipes]
Length = 154
Score = 31.2 bits (69), Expect = 6.2
Identities = 24/71 (33%), Positives = 32/71 (44%), Gaps = 4/71 (5%)
Frame = +2
Query: 23 KHYQKYNQNAAFHHAIIE--QPLTRPF*PNPNLHCYRTESKPSFYFLKT--FSQQPPQVY 190
+H+Q Q HH ++ PLT P PNP H Y +PS T S P V
Sbjct: 68 QHFQAAQQQHHHHHHLMGGFNPLTPPGXPNPMQHFYGGNLRPSPQPTPTSASSVAPVAVA 127
Query: 191 LFGSESKKMHS 223
GS S+K+ +
Sbjct: 128 NGGSSSEKLQA 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,025,041
Number of Sequences: 1393205
Number of extensions: 7703892
Number of successful extensions: 16501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16492
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
