Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020481A_C01 KMC020481A_c01
(441 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_145470.1| similar to Putative G protein-coupled receptor ... 33 0.80
ref|NP_691945.1| inner spore coat protein D [Oceanobacillus ihey... 32 1.8
ref|ZP_00126244.1| hypothetical protein [Pseudomonas syringae pv... 32 1.8
ref|NP_794301.1| MFS transporter, phthalate permease family [Pse... 32 1.8
gb|AAM50272.1| LD44584p [Drosophila melanogaster] 32 1.8
>ref|XP_145470.1| similar to Putative G protein-coupled receptor GPR41 [Mus musculus]
Length = 319
Score = 33.1 bits (74), Expect = 0.80
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -2
Query: 239 GSSCSM*RWIVFFSWYLIFFSVNFFLPVLRLCFFVGQLRR 120
G+S + + +FFS YL+ F V L V+ L FVG+LRR
Sbjct: 2 GTSFFLGNYWLFFSVYLLVFLVGLPLNVMALVVFVGKLRR 41
>ref|NP_691945.1| inner spore coat protein D [Oceanobacillus iheyensis HTE831]
gi|22776705|dbj|BAC12980.1| inner spore coat protein D
[Oceanobacillus iheyensis HTE831]
Length = 139
Score = 32.0 bits (71), Expect = 1.8
Identities = 17/59 (28%), Positives = 25/59 (41%), Gaps = 1/59 (1%)
Frame = +1
Query: 139 KKHNRKTGRKKLTEKKIKYQLKNTIHLHI-EQLEPPPLLPLQHHGVKSKHLQAHMASWQ 312
+ H R G +K K+ NT + + P + HH VK+KH H S+Q
Sbjct: 3 RHHGRHCGCEKTVVHPTKHNCVNTCSESVVNHVHPSHTTVMNHHTVKNKHFYPHSTSYQ 61
>ref|ZP_00126244.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 461
Score = 32.0 bits (71), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 203 FSWYLIFFSVNFFLPVLRLCFFVGQLRRVNCTE 105
F W L+F N L V+ F VG+++RV E
Sbjct: 409 FKWALVFVGANALLAVISYIFIVGEIKRVELKE 441
>ref|NP_794301.1| MFS transporter, phthalate permease family [Pseudomonas syringae
pv. tomato str. DC3000] gi|28854934|gb|AAO57996.1| MFS
transporter, phthalate permease family [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 461
Score = 32.0 bits (71), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 203 FSWYLIFFSVNFFLPVLRLCFFVGQLRRVNCTE 105
F W L+F N L V+ F VG+++RV E
Sbjct: 409 FKWALVFVGANALLAVISYIFIVGEIKRVELKE 441
>gb|AAM50272.1| LD44584p [Drosophila melanogaster]
Length = 683
Score = 32.0 bits (71), Expect = 1.8
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 5/58 (8%)
Frame = +3
Query: 195 PAEEHYPSSHRTTRT-----TTIAPTSASWSEEQTSSGTHGKLATLVLSFTIRNPVVP 353
PA+ H P HR TR T++A +S+S T+S T +T + T R P
Sbjct: 268 PAQTHPPQPHRPTRPQLSPGTSLAASSSSHWPSSTTSTTSSTTSTTTTTTTTRRTTTP 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,207,640
Number of Sequences: 1393205
Number of extensions: 7827872
Number of successful extensions: 24487
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 22938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24369
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
