Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020479A_C01 KMC020479A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA76902.1| cycloartenol synthase [Glycyrrhiza glabra] 250 9e-66
pir||JC5590 cycloartenol synthase (EC 5.4.99.8) - garden pea gi|... 245 2e-64
dbj|BAB83086.1| cycloartenol synthase [Betula platyphylla] 219 1e-56
ref|NP_178722.1| cycloartenol synthase ((S)-2,3-epoxysqualene mu... 218 4e-56
gb|AAC04931.1| cycloartenol synthase; (S)-2,3-epoxysqualene muta... 218 4e-56
>dbj|BAA76902.1| cycloartenol synthase [Glycyrrhiza glabra]
Length = 757
Score = 250 bits (638), Expect = 9e-66
Identities = 114/133 (85%), Positives = 125/133 (93%)
Frame = +2
Query: 149 MWKLKIAEGGNPWLRSTNSHVGRQVWEFDPKLGSPQDLAEIETARNNFHDNRFSHKHSSD 328
MWKLKIAEGG+PWLR+ N+HVGRQVWEFDPKLGSP+DL EIE AR NFHDNRF+HKHS+D
Sbjct: 1 MWKLKIAEGGSPWLRTVNNHVGRQVWEFDPKLGSPEDLLEIEKARQNFHDNRFTHKHSAD 60
Query: 329 LLMRIQFSKENPIGEVLPKVKVKDVEDVTEEAVVTTLRRAISFHSTLQSHDGHWPGDYGG 508
LLMRI F+KENP+ EVLPKV+VKD+EDVTEE V TTLRRAI+FHSTLQSHDGHWPGDYGG
Sbjct: 61 LLMRIHFAKENPMNEVLPKVRVKDIEDVTEETVKTTLRRAINFHSTLQSHDGHWPGDYGG 120
Query: 509 PMFLMPGLVITLS 547
PMFLMPGLVITLS
Sbjct: 121 PMFLMPGLVITLS 133
>pir||JC5590 cycloartenol synthase (EC 5.4.99.8) - garden pea
gi|2627181|dbj|BAA23533.1| cycloartenol synthase [Pisum
sativum]
Length = 756
Score = 245 bits (626), Expect = 2e-64
Identities = 111/133 (83%), Positives = 123/133 (92%)
Frame = +2
Query: 149 MWKLKIAEGGNPWLRSTNSHVGRQVWEFDPKLGSPQDLAEIETARNNFHDNRFSHKHSSD 328
MWKLK+AEGG PWLR+ N+HVGRQVWEFDP GSPQDL +IETAR NFHDNRF+HKHS D
Sbjct: 1 MWKLKVAEGGTPWLRTLNNHVGRQVWEFDPHSGSPQDLDDIETARRNFHDNRFTHKHSDD 60
Query: 329 LLMRIQFSKENPIGEVLPKVKVKDVEDVTEEAVVTTLRRAISFHSTLQSHDGHWPGDYGG 508
LLMR+QF+KENP+ EVLPKVKVKDVEDVTEEAV TTLRR ++F+ST+QSHDGHWPGDYGG
Sbjct: 61 LLMRLQFAKENPMNEVLPKVKVKDVEDVTEEAVATTLRRGLNFYSTIQSHDGHWPGDYGG 120
Query: 509 PMFLMPGLVITLS 547
PMFLMPGLVITLS
Sbjct: 121 PMFLMPGLVITLS 133
>dbj|BAB83086.1| cycloartenol synthase [Betula platyphylla]
Length = 757
Score = 219 bits (559), Expect = 1e-56
Identities = 105/133 (78%), Positives = 114/133 (84%)
Frame = +2
Query: 149 MWKLKIAEGGNPWLRSTNSHVGRQVWEFDPKLGSPQDLAEIETARNNFHDNRFSHKHSSD 328
MWKLKIAEGG+PWLR+ N+HVGRQVWEFDPKLGSP++LAEIE AR RF KHSSD
Sbjct: 1 MWKLKIAEGGSPWLRTLNNHVGRQVWEFDPKLGSPEELAEIERARETSLKVRFEKKHSSD 60
Query: 329 LLMRIQFSKENPIGEVLPKVKVKDVEDVTEEAVVTTLRRAISFHSTLQSHDGHWPGDYGG 508
LLMRIQF+KENP G VLP+VKV + EDVTEE V LRRAISFHSTLQ+HDGHW GDYGG
Sbjct: 61 LLMRIQFAKENPRGAVLPQVKVNETEDVTEEMVTRMLRRAISFHSTLQAHDGHWAGDYGG 120
Query: 509 PMFLMPGLVITLS 547
PMFLMPGLVITLS
Sbjct: 121 PMFLMPGLVITLS 133
>ref|NP_178722.1| cycloartenol synthase ((S)-2,3-epoxysqualene mutase) (CAS1);
protein id: At2g07050.1, supported by cDNA: gi_20453055,
supported by cDNA: gi_452445 [Arabidopsis thaliana]
gi|21542399|sp|P38605|CAS1_ARATH Cycloartenol synthase
(2,3-epoxysqualene--cycloartenol cyclase)
gi|25311984|pir||H84481 cycloartenol synthase [imported]
- Arabidopsis thaliana gi|20197302|gb|AAM15015.1|
cycloartenol synthase [Arabidopsis thaliana]
gi|20453056|gb|AAM19773.1| At2g07050/T4E14.16
[Arabidopsis thaliana] gi|24796994|gb|AAN64509.1|
At2g07050/T4E14.16 [Arabidopsis thaliana]
Length = 759
Score = 218 bits (555), Expect = 4e-56
Identities = 96/133 (72%), Positives = 117/133 (87%)
Frame = +2
Query: 149 MWKLKIAEGGNPWLRSTNSHVGRQVWEFDPKLGSPQDLAEIETARNNFHDNRFSHKHSSD 328
MWKLKIAEGG+PWLR+TN+HVGRQ WEFDP LG+P+DLA +E AR +F DNRF KHS+D
Sbjct: 1 MWKLKIAEGGSPWLRTTNNHVGRQFWEFDPNLGTPEDLAAVEEARKSFSDNRFVQKHSAD 60
Query: 329 LLMRIQFSKENPIGEVLPKVKVKDVEDVTEEAVVTTLRRAISFHSTLQSHDGHWPGDYGG 508
LLMR+QFS+EN I VLP+VK++D +DVTEE V TTL+R + F+ST+Q+HDGHWPGDYGG
Sbjct: 61 LLMRLQFSRENLISPVLPQVKIEDTDDVTEEMVETTLKRGLDFYSTIQAHDGHWPGDYGG 120
Query: 509 PMFLMPGLVITLS 547
PMFL+PGL+ITLS
Sbjct: 121 PMFLLPGLIITLS 133
>gb|AAC04931.1| cycloartenol synthase; (S)-2,3-epoxysqualene mutase [Arabidopsis
thaliana]
Length = 759
Score = 218 bits (555), Expect = 4e-56
Identities = 96/133 (72%), Positives = 117/133 (87%)
Frame = +2
Query: 149 MWKLKIAEGGNPWLRSTNSHVGRQVWEFDPKLGSPQDLAEIETARNNFHDNRFSHKHSSD 328
MWKLKIAEGG+PWLR+TN+HVGRQ WEFDP LG+P+DLA +E AR +F DNRF KHS+D
Sbjct: 1 MWKLKIAEGGSPWLRTTNNHVGRQFWEFDPNLGTPEDLAAVEEARKSFSDNRFVQKHSAD 60
Query: 329 LLMRIQFSKENPIGEVLPKVKVKDVEDVTEEAVVTTLRRAISFHSTLQSHDGHWPGDYGG 508
LLMR+QFS+EN I VLP+VK++D +DVTEE V TTL+R + F+ST+Q+HDGHWPGDYGG
Sbjct: 61 LLMRLQFSRENLISPVLPQVKIEDTDDVTEEMVETTLKRGLDFYSTIQAHDGHWPGDYGG 120
Query: 509 PMFLMPGLVITLS 547
PMFL+PGL+ITLS
Sbjct: 121 PMFLLPGLIITLS 133
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,613,624
Number of Sequences: 1393205
Number of extensions: 9605822
Number of successful extensions: 45654
Number of sequences better than 10.0: 157
Number of HSP's better than 10.0 without gapping: 32707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42201
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
