Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020478A_C01 KMC020478A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF16414.1|AF126550_1 mannosyl-oligosaccharide 1,2-alpha-mann... 118 5e-26
ref|NP_175570.1| mannosyl-oligosaccharide alpha-1,2-mannosidase,... 75 4e-13
gb|AAK92711.1| putative mannosidase [Arabidopsis thaliana] 69 3e-11
ref|NP_566675.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase,... 69 3e-11
ref|XP_231842.1| similar to protease [Sus scrofa] [Rattus norveg... 33 2.7
>gb|AAF16414.1|AF126550_1 mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine max]
Length = 578
Score = 118 bits (295), Expect = 5e-26
Identities = 58/69 (84%), Positives = 65/69 (94%), Gaps = 1/69 (1%)
Frame = -1
Query: 249 MARGTRSV-TSSSKWRYCHPSYYLKRPKRLALLFIVFVFATFVFWDRQTLVSEHQVEIAE 73
MARG+RSV +SSSKWRYC+PSYYLKRPKRLALLFIVFV +FVFWDRQTLV EHQVEI+E
Sbjct: 1 MARGSRSVGSSSSKWRYCNPSYYLKRPKRLALLFIVFVCVSFVFWDRQTLVREHQVEISE 60
Query: 72 LRKEVTDLQ 46
L+KEVTDL+
Sbjct: 61 LQKEVTDLK 69
>ref|NP_175570.1| mannosyl-oligosaccharide alpha-1,2-mannosidase, putative; protein
id: At1g51590.1, supported by cDNA: gi_19699012
[Arabidopsis thaliana] gi|25353881|pir||E96554
hypothetical protein F19C24.18 [imported] - Arabidopsis
thaliana gi|12321674|gb|AAG50876.1|AC025294_14
mannosyl-oligosaccharide alpha-1,2-mannosidase, putative
[Arabidopsis thaliana]
gi|12325364|gb|AAG52623.1|AC024261_10
mannosyl-oligosaccharide 1,2-alpha-mannosidase,
putative; 8615-12432 [Arabidopsis thaliana]
gi|19699013|gb|AAL91242.1| mannosyl-oligosaccharide
1,2-alpha-mannosidase, putative [Arabidopsis thaliana]
gi|22136334|gb|AAM91245.1| mannosyl-oligosaccharide
1,2-alpha-mannosidase, putative [Arabidopsis thaliana]
Length = 560
Score = 75.5 bits (184), Expect = 4e-13
Identities = 35/68 (51%), Positives = 51/68 (74%)
Frame = -1
Query: 249 MARGTRSVTSSSKWRYCHPSYYLKRPKRLALLFIVFVFATFVFWDRQTLVSEHQVEIAEL 70
MAR +RS++ W+Y +P+YYL+RP+RLALLFIVFV + + WDR L EH+VE+ +L
Sbjct: 1 MAR-SRSISGYGIWKYLNPAYYLRRPRRLALLFIVFVSVSMLVWDRINLAREHEVEVFKL 59
Query: 69 RKEVTDLQ 46
+EV+ L+
Sbjct: 60 NEEVSRLE 67
>gb|AAK92711.1| putative mannosidase [Arabidopsis thaliana]
Length = 572
Score = 68.9 bits (167), Expect = 3e-11
Identities = 32/68 (47%), Positives = 47/68 (69%)
Frame = -1
Query: 249 MARGTRSVTSSSKWRYCHPSYYLKRPKRLALLFIVFVFATFVFWDRQTLVSEHQVEIAEL 70
MAR S W+Y +P++YL+RP+RLALL I+FV + V WDRQ+L ++Q E+++L
Sbjct: 1 MARNKLVSGSHGIWKYFNPAFYLRRPRRLALLIILFVSVSMVVWDRQSLSRDYQFEVSKL 60
Query: 69 RKEVTDLQ 46
+EV LQ
Sbjct: 61 NEEVLRLQ 68
>ref|NP_566675.1| mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative; protein
id: At3g21160.1, supported by cDNA: gi_15292684
[Arabidopsis thaliana] gi|24030231|gb|AAN41293.1|
putative mannosidase [Arabidopsis thaliana]
Length = 572
Score = 68.9 bits (167), Expect = 3e-11
Identities = 32/68 (47%), Positives = 47/68 (69%)
Frame = -1
Query: 249 MARGTRSVTSSSKWRYCHPSYYLKRPKRLALLFIVFVFATFVFWDRQTLVSEHQVEIAEL 70
MAR S W+Y +P++YL+RP+RLALL I+FV + V WDRQ+L ++Q E+++L
Sbjct: 1 MARNKLVSGSHGIWKYFNPAFYLRRPRRLALLIILFVSVSMVVWDRQSLSRDYQFEVSKL 60
Query: 69 RKEVTDLQ 46
+EV LQ
Sbjct: 61 NEEVLRLQ 68
>ref|XP_231842.1| similar to protease [Sus scrofa] [Rattus norvegicus]
Length = 330
Score = 32.7 bits (73), Expect = 2.7
Identities = 16/70 (22%), Positives = 41/70 (57%), Gaps = 2/70 (2%)
Frame = +2
Query: 209 HLLLLVTDLVPLAIPKS--KKRQRSKL*SKNKQPTTLKLDGGSWHRFLEIYACVCPMWLE 382
HL L+ ++ P+ +P +K++ ++L + ++ ++ ++ W+R +E+Y+C P+ ++
Sbjct: 34 HLSLVSQEVQPIRVPVRVPQKQKSNRLEQEEEKTSSSRIFFSFWNRRVELYSCCEPVSIK 93
Query: 383 LWDVNSRTGS 412
V TG+
Sbjct: 94 RPGVQGATGN 103
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,711,017
Number of Sequences: 1393205
Number of extensions: 10249369
Number of successful extensions: 26126
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26115
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
