Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020476A_C01 KMC020476A_c01
(456 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199109.1| putative protein; protein id: At5g42950.1 [Arab... 137 4e-32
dbj|BAB90655.1| B1033B05.5 [Oryza sativa (japonica cultivar-grou... 45 3e-04
ref|NP_173840.1| unknown protein; protein id: At1g24300.1 [Arabi... 43 0.001
pir||F86399 protein F17L21.22 [imported] - Arabidopsis thaliana ... 40 0.011
ref|NP_174063.1| unknown protein; protein id: At1g27430.1 [Arabi... 40 0.011
>ref|NP_199109.1| putative protein; protein id: At5g42950.1 [Arabidopsis thaliana]
gi|9758584|dbj|BAB09197.1|
gb|AAC80623.1~gene_id:MBD2.15~similar to unknown protein
[Arabidopsis thaliana]
Length = 1714
Score = 137 bits (346), Expect = 4e-32
Identities = 67/105 (63%), Positives = 78/105 (73%)
Frame = +3
Query: 141 PPLQISKDVTGSDNPIPLSPQWLLPKPVESKPGSGNVGNNVISIPPYGTHSETVKTSGNG 320
PP QI KD+ GSDN IPLSPQWLL KP E+K G G N YG HS+ V+T+GNG
Sbjct: 21 PPHQIFKDIQGSDNAIPLSPQWLLSKPGENKTGMGTGDPN-----QYGNHSDVVRTTGNG 75
Query: 321 EDGHDVQKRKDVFRPSMLDSESGRRDRWRDEERETKSATRKDRWR 455
E+ D K+KDVFRPS+LD+ESGRRDRWRDEER+T S+ R DRWR
Sbjct: 76 EETLDNLKKKDVFRPSLLDAESGRRDRWRDEERDTLSSVRNDRWR 120
>dbj|BAB90655.1| B1033B05.5 [Oryza sativa (japonica cultivar-group)]
gi|20161927|dbj|BAB90838.1| P0592G05.24 [Oryza sativa
(japonica cultivar-group)]
Length = 1530
Score = 45.4 bits (106), Expect = 3e-04
Identities = 37/112 (33%), Positives = 54/112 (48%)
Frame = +3
Query: 114 DSPLRVAAAPPLQISKDVTGSDNPIPLSPQWLLPKPVESKPGSGNVGNNVISIPPYGTHS 293
D AA + SKD DN IPLSPQWL KP ++K +G+ + P +
Sbjct: 23 DDMAAAAAIGFVDESKDQQHLDNSIPLSPQWLYAKPTDAK----ILGHGSLLDP---SEK 75
Query: 294 ETVKTSGNGEDGHDVQKRKDVFRPSMLDSESGRRDRWRDEERETKSATRKDR 449
E G + ++R++VF D++S RW +EERET R++R
Sbjct: 76 EVRMPEGAAD---KKERRRNVF-----DADSSL--RWLEEERETSLPGRRER 117
>ref|NP_173840.1| unknown protein; protein id: At1g24300.1 [Arabidopsis thaliana]
gi|7486371|pir||T00661 hypothetical protein F3I6.24 -
Arabidopsis thaliana gi|2829883|gb|AAC00591.1| Unknown
protein [Arabidopsis thaliana]
Length = 1417
Score = 43.1 bits (100), Expect = 0.001
Identities = 32/91 (35%), Positives = 41/91 (44%), Gaps = 7/91 (7%)
Frame = +3
Query: 174 SDNPIPLSPQWLLPKPVESKPGSGNVGNNVISIPPYGTHSETVKTSGNGEDGH------- 332
SDN IPLSPQWL K ESK S T GN D +
Sbjct: 26 SDNSIPLSPQWLYTKSSESK---------------MDVRSPTPMPMGNPSDPNLKDAWRL 70
Query: 333 DVQKRKDVFRPSMLDSESGRRDRWRDEERET 425
D + K ++ + ++E+ R RWR+EERET
Sbjct: 71 DAPEDKKDWKKIVSENETNR--RWREEERET 99
>pir||F86399 protein F17L21.22 [imported] - Arabidopsis thaliana
gi|9802542|gb|AAF99744.1|AC004557_23 F17L21.22
[Arabidopsis thaliana]
Length = 1475
Score = 40.0 bits (92), Expect = 0.011
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +3
Query: 174 SDNPIPLSPQWLLPKPVESKPGSGNVGNNVISIPPYGTHSETVKTSGNGEDGH------- 332
SDN IPLSPQWL K E K S T GN D +
Sbjct: 26 SDNSIPLSPQWLYTKSSEYK---------------MDVRSPTPVPMGNPSDPNPKDAWRL 70
Query: 333 DVQKRKDVFRPSMLDSESGRRDRWRDEERET 425
D + K ++ + ++E+ R RWR+EERET
Sbjct: 71 DAPEDKKDWKKIVHENETSR--RWREEERET 99
>ref|NP_174063.1| unknown protein; protein id: At1g27430.1 [Arabidopsis thaliana]
Length = 1453
Score = 40.0 bits (92), Expect = 0.011
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +3
Query: 174 SDNPIPLSPQWLLPKPVESKPGSGNVGNNVISIPPYGTHSETVKTSGNGEDGH------- 332
SDN IPLSPQWL K E K S T GN D +
Sbjct: 26 SDNSIPLSPQWLYTKSSEYK---------------MDVRSPTPVPMGNPSDPNPKDAWRL 70
Query: 333 DVQKRKDVFRPSMLDSESGRRDRWRDEERET 425
D + K ++ + ++E+ R RWR+EERET
Sbjct: 71 DAPEDKKDWKKIVHENETSR--RWREEERET 99
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,892,799
Number of Sequences: 1393205
Number of extensions: 11381109
Number of successful extensions: 50417
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 44070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49629
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
