Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020473A_C01 KMC020473A_c01
(476 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC37429.1| contains MCM2/3/5 family signature; PROSITE; PS00... 141 4e-33
ref|NP_192115.1| PROLIFERA; protein id: At4g02060.1, supported b... 140 5e-33
emb|CAC44902.1| replication licensing factor MCM7 homologue [Zea... 139 1e-32
sp|P38132|CC47_YEAST DNA replication licensing factor CDC47 (Cel... 43 0.002
ref|NP_009761.1| Essential for initiation of DNA replication; Cd... 43 0.002
>gb|AAC37429.1| contains MCM2/3/5 family signature; PROSITE; PS00847; disruption
leads to early lethal phenotype; similar to MCM2/3/5
family, most similar to YBR1441
Length = 716
Score = 141 bits (355), Expect = 4e-33
Identities = 66/78 (84%), Positives = 73/78 (92%)
Frame = -3
Query: 471 SLYSDERQKSGLDAISDIYSVLRDEAARSKQMDISYARALNWISRKGYSEAQLKECLEEY 292
SLY+D+RQK+GLDAISD YS++RDEAARSK+ +SYA ALNWISRKGYSEAQLKECLEEY
Sbjct: 639 SLYADDRQKAGLDAISDTYSIIRDEAARSKKTHVSYANALNWISRKGYSEAQLKECLEEY 698
Query: 291 AALNVWQIHPHTFDIRFI 238
AALNVWQI PHTFDIRFI
Sbjct: 699 AALNVWQIEPHTFDIRFI 716
>ref|NP_192115.1| PROLIFERA; protein id: At4g02060.1, supported by cDNA: gi_675490
[Arabidopsis thaliana] gi|20141757|sp|P43299|PROL_ARATH
PROLIFERA protein gi|7428561|pir||T01507 replication
licensing factor MCM7 - Arabidopsis thaliana
gi|2104530|gb|AAC78698.1| PROLIFERA [Arabidopsis
thaliana] gi|2104548|gb|AAB57797.1| AGAA.2, PROLIFERA
[Arabidopsis thaliana] gi|7268590|emb|CAB80699.1|
PROLIFERA [Arabidopsis thaliana]
Length = 716
Score = 140 bits (354), Expect = 5e-33
Identities = 66/78 (84%), Positives = 73/78 (92%)
Frame = -3
Query: 471 SLYSDERQKSGLDAISDIYSVLRDEAARSKQMDISYARALNWISRKGYSEAQLKECLEEY 292
SLY+D+RQK+GLDAISD YS++RDEAARSK+ +SYA ALNWISRKGYSEAQLKECLEEY
Sbjct: 639 SLYADDRQKAGLDAISDTYSIIRDEAARSKKTHVSYANALNWISRKGYSEAQLKECLEEY 698
Query: 291 AALNVWQIHPHTFDIRFI 238
AALNVWQI PHTFDIRFI
Sbjct: 699 AALNVWQIDPHTFDIRFI 716
>emb|CAC44902.1| replication licensing factor MCM7 homologue [Zea mays]
Length = 720
Score = 139 bits (351), Expect = 1e-32
Identities = 66/80 (82%), Positives = 73/80 (90%)
Frame = -3
Query: 474 FSLYSDERQKSGLDAISDIYSVLRDEAARSKQMDISYARALNWISRKGYSEAQLKECLEE 295
+SLYSD+RQ+SGLDAISDIYS+LRDEAAR+ MD+ YA ALN ISRKGYSEAQLKECLEE
Sbjct: 640 YSLYSDDRQRSGLDAISDIYSILRDEAARTSSMDVRYAHALNLISRKGYSEAQLKECLEE 699
Query: 294 YAALNVWQIHPHTFDIRFID 235
YA+LNVWQIHP TFDI FID
Sbjct: 700 YASLNVWQIHPSTFDIHFID 719
>sp|P38132|CC47_YEAST DNA replication licensing factor CDC47 (Cell division control
protein 47) gi|608169|gb|AAA86309.1| Cdc47p
Length = 845
Score = 43.1 bits (100), Expect = 0.002
Identities = 19/80 (23%), Positives = 42/80 (51%), Gaps = 1/80 (1%)
Frame = -3
Query: 471 SLYSD-ERQKSGLDAISDIYSVLRDEAARSKQMDISYARALNWISRKGYSEAQLKECLEE 295
SLY + + K + I+++++ + + +SY + + +G++ QL C++E
Sbjct: 726 SLYQETNKSKEDESPTTKIFTIIKKMLQETGKNTLSYENIVKTVRLRGFTMLQLSNCIQE 785
Query: 294 YAALNVWQIHPHTFDIRFID 235
Y+ LNVW + ++F+D
Sbjct: 786 YSYLNVWHLINEGNTLKFVD 805
>ref|NP_009761.1| Essential for initiation of DNA replication; Cdc47p [Saccharomyces
cerevisiae] gi|419857|pir||S34027 replication licensing
factor MCM7 [validated] - yeast (Saccharomyces
cerevisiae) gi|311678|emb|CAA79689.1| unknown
[Saccharomyces cerevisiae] gi|536577|emb|CAA85166.1| ORF
YBR202w [Saccharomyces cerevisiae]
Length = 845
Score = 43.1 bits (100), Expect = 0.002
Identities = 19/80 (23%), Positives = 42/80 (51%), Gaps = 1/80 (1%)
Frame = -3
Query: 471 SLYSD-ERQKSGLDAISDIYSVLRDEAARSKQMDISYARALNWISRKGYSEAQLKECLEE 295
SLY + + K + I+++++ + + +SY + + +G++ QL C++E
Sbjct: 726 SLYQETNKSKEDESPTTKIFTIIKKMLQETGKNTLSYENIVKTVRLRGFTMLQLSNCIQE 785
Query: 294 YAALNVWQIHPHTFDIRFID 235
Y+ LNVW + ++F+D
Sbjct: 786 YSYLNVWHLINEGNTLKFVD 805
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,547,464
Number of Sequences: 1393205
Number of extensions: 8493484
Number of successful extensions: 19174
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 18939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19171
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
