Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020472A_C01 KMC020472A_c01
(912 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196044.1| zinc finger protein - like; protein id: At5g042... 134 1e-30
ref|NP_680116.1| similar to zinc finger protein - like; protein ... 124 2e-27
pir||T06699 zinc finger protein T29H11.50 - Arabidopsis thaliana... 124 2e-27
dbj|BAB92564.1| putative zinc finger protein [Oryza sativa (japo... 120 2e-26
gb|AAN87735.1| Hypothetical protein [Oryza sativa (japonica cult... 97 3e-19
>ref|NP_196044.1| zinc finger protein - like; protein id: At5g04240.1 [Arabidopsis
thaliana] gi|9955579|emb|CAC05506.1| zinc finger
protein-like [Arabidopsis thaliana]
Length = 1327
Score = 134 bits (338), Expect = 1e-30
Identities = 55/70 (78%), Positives = 64/70 (90%)
Frame = -2
Query: 911 IHQRVHEDKRPLKCPWKGCSMSFKWAWARIEHLRLHTGEKPYQCKVEGCGLSFRYVSDFS 732
+HQRVH+D+RP +C WKGCSM+FKW WAR EHLRLHTGE+PY CKV+GCGLSFR+VSD+S
Sbjct: 1257 LHQRVHKDERPFECSWKGCSMTFKWQWARTEHLRLHTGERPYICKVDGCGLSFRFVSDYS 1316
Query: 731 RHRRKTGHYV 702
RHRRKT HYV
Sbjct: 1317 RHRRKTMHYV 1326
>ref|NP_680116.1| similar to zinc finger protein - like; protein id: At3g48430.1
[Arabidopsis thaliana]
Length = 1354
Score = 124 bits (311), Expect = 2e-27
Identities = 50/70 (71%), Positives = 58/70 (82%)
Frame = -2
Query: 908 HQRVHEDKRPLKCPWKGCSMSFKWAWARIEHLRLHTGEKPYQCKVEGCGLSFRYVSDFSR 729
HQRVH D RPLKCPWKGC M+FKWAW+R EH+R+HTG +PY C CG +FR+VSDFSR
Sbjct: 1280 HQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSR 1339
Query: 728 HRRKTGHYVK 699
H+RKTGH VK
Sbjct: 1340 HKRKTGHSVK 1349
>pir||T06699 zinc finger protein T29H11.50 - Arabidopsis thaliana
gi|4678345|emb|CAB41155.1| putative zinc finger protein
[Arabidopsis thaliana]
Length = 1360
Score = 124 bits (311), Expect = 2e-27
Identities = 50/70 (71%), Positives = 58/70 (82%)
Frame = -2
Query: 908 HQRVHEDKRPLKCPWKGCSMSFKWAWARIEHLRLHTGEKPYQCKVEGCGLSFRYVSDFSR 729
HQRVH D RPLKCPWKGC M+FKWAW+R EH+R+HTG +PY C CG +FR+VSDFSR
Sbjct: 1286 HQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSR 1345
Query: 728 HRRKTGHYVK 699
H+RKTGH VK
Sbjct: 1346 HKRKTGHSVK 1355
>dbj|BAB92564.1| putative zinc finger protein [Oryza sativa (japonica cultivar-group)]
Length = 1283
Score = 120 bits (302), Expect = 2e-26
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = -2
Query: 908 HQRVHEDKRPLKCPWKGCSMSFKWAWARIEHLRLHTGEKPYQCKVEGCGLSFRYVSDFSR 729
H++VH D RPL CPWKGC+M+FKW WAR EHLR+HTG++PY C GC +FR+VSDFSR
Sbjct: 1207 HRKVHTDDRPLTCPWKGCNMAFKWPWARTEHLRVHTGDRPYVCHEPGCAQTFRFVSDFSR 1266
Query: 728 HRRKTGHYVK 699
H+RKTGH VK
Sbjct: 1267 HKRKTGHSVK 1276
>gb|AAN87735.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 651
Score = 97.1 bits (240), Expect = 3e-19
Identities = 34/64 (53%), Positives = 49/64 (76%)
Frame = -2
Query: 908 HQRVHEDKRPLKCPWKGCSMSFKWAWARIEHLRLHTGEKPYQCKVEGCGLSFRYVSDFSR 729
HQ +H D P KCPW+GCSM+FKW+W R EH ++H G++PY+C GC +++VSDF+R
Sbjct: 583 HQSIHNDDMPYKCPWEGCSMAFKWSWDRGEHFQVHAGKRPYKCTTPGCSKIYKFVSDFTR 642
Query: 728 HRRK 717
H+R+
Sbjct: 643 HKRR 646
Score = 37.0 bits (84), Expect = 0.41
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 872 CPWKGCSMSFKWAWARIEHLRLHTGEKPYQCKVEGCGLSFRYVSDFSRH 726
C K C F+ H +H + PY+C EGC ++F++ D H
Sbjct: 565 CTVKSCGRHFRSHKYLRRHQSIHNDDMPYKCPWEGCSMAFKWSWDRGEH 613
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 688,906,093
Number of Sequences: 1393205
Number of extensions: 13892607
Number of successful extensions: 67205
Number of sequences better than 10.0: 4481
Number of HSP's better than 10.0 without gapping: 27549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51421
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49918505760
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
