Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020471A_C01 KMC020471A_c01
(440 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198122.1| ribosomal protein S21 - like; protein id: At5g2... 99 3e-31
sp|P35687|RS21_ORYSA 40S RIBOSOMAL PROTEIN S21 gi|481227|pir||S3... 100 1e-30
ref|NP_190957.1| 40S ribosomal protein S21 homolog; protein id: ... 100 5e-30
gb|AAM63744.1| 40S ribosomal protein S21 homolog [Arabidopsis th... 100 2e-29
sp|Q41852|RS21_MAIZE 40S RIBOSOMAL PROTEIN S21 gi|7440559|pir||T... 97 7e-29
>ref|NP_198122.1| ribosomal protein S21 - like; protein id: At5g27700.1, supported by
cDNA: 93174., supported by cDNA: gi_19424103
[Arabidopsis thaliana]
Length = 85
Score = 99.0 bits (245), Expect(2) = 3e-31
Identities = 42/56 (75%), Positives = 51/56 (91%)
Frame = -3
Query: 336 KDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAIDRLWQKKKAEIKQQ 169
KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RAQGDADS +DRLWQKKK E KQ+
Sbjct: 27 KDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQK 82
Score = 56.2 bits (134), Expect(2) = 3e-31
Identities = 25/27 (92%), Positives = 27/27 (99%)
Frame = -2
Query: 415 MQNEEGQITELYIPRKCSATNRLITAK 335
MQNEEGQ+TELYIPRKCSATNRLIT+K
Sbjct: 1 MQNEEGQVTELYIPRKCSATNRLITSK 27
>sp|P35687|RS21_ORYSA 40S RIBOSOMAL PROTEIN S21 gi|481227|pir||S38357 ribosomal protein
S21, cytosolic - rice gi|303839|dbj|BAA02158.1| 40S
subunit ribosomal protein [Oryza sativa (japonica
cultivar-group)]
Length = 82
Score = 100 bits (250), Expect(2) = 1e-30
Identities = 44/56 (78%), Positives = 55/56 (97%)
Frame = -3
Query: 336 KDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAIDRLWQKKKAEIKQQ 169
KDHASVQINIGH+DE+G+Y+G+F+T+AL G+IRAQGDADSA+DRLWQK+KAE+KQQ
Sbjct: 27 KDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAEVKQQ 82
Score = 52.4 bits (124), Expect(2) = 1e-30
Identities = 22/27 (81%), Positives = 26/27 (95%)
Frame = -2
Query: 415 MQNEEGQITELYIPRKCSATNRLITAK 335
MQNEEGQ+ +LY+PRKCSATNR+ITAK
Sbjct: 1 MQNEEGQMVDLYVPRKCSATNRIITAK 27
>ref|NP_190957.1| 40S ribosomal protein S21 homolog; protein id: At3g53890.1,
supported by cDNA: 26837., supported by cDNA:
gi_17473932, supported by cDNA: gi_20148436 [Arabidopsis
thaliana] gi|27923842|sp|Q9M337|R21B_ARATH 40S ribosomal
protein S21-2 gi|11276646|pir||T45929 40S ribosomal
protein S21 homolog - Arabidopsis thaliana
gi|7630009|emb|CAB88351.1| 40S ribosomal protein S21
homolog [Arabidopsis thaliana]
gi|17473933|gb|AAL38376.1| 40S ribosomal protein S21
homolog [Arabidopsis thaliana]
gi|20148437|gb|AAM10109.1| 40S ribosomal protein S21
homolog [Arabidopsis thaliana]
Length = 82
Score = 100 bits (249), Expect(2) = 5e-30
Identities = 43/56 (76%), Positives = 51/56 (90%)
Frame = -3
Query: 336 KDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAIDRLWQKKKAEIKQQ 169
KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RAQGDADS +DRLWQKKK E KQQ
Sbjct: 27 KDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82
Score = 50.8 bits (120), Expect(2) = 5e-30
Identities = 21/27 (77%), Positives = 26/27 (95%)
Frame = -2
Query: 415 MQNEEGQITELYIPRKCSATNRLITAK 335
M+N+ GQ+TELYIPRKCSATNR+IT+K
Sbjct: 1 MENDAGQVTELYIPRKCSATNRMITSK 27
>gb|AAM63744.1| 40S ribosomal protein S21 homolog [Arabidopsis thaliana]
Length = 82
Score = 100 bits (249), Expect(2) = 2e-29
Identities = 43/56 (76%), Positives = 51/56 (90%)
Frame = -3
Query: 336 KDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAIDRLWQKKKAEIKQQ 169
KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RAQGDADS +DRLWQKKK E KQQ
Sbjct: 27 KDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82
Score = 48.5 bits (114), Expect(2) = 2e-29
Identities = 20/27 (74%), Positives = 25/27 (92%)
Frame = -2
Query: 415 MQNEEGQITELYIPRKCSATNRLITAK 335
M+N+ GQ+TELYIP KCSATNR+IT+K
Sbjct: 1 MENDAGQVTELYIPSKCSATNRMITSK 27
>sp|Q41852|RS21_MAIZE 40S RIBOSOMAL PROTEIN S21 gi|7440559|pir||T03945 ribosomal protein
S21 - maize gi|1419372|emb|CAA67225.1| ribosomal protein
S21 [Zea mays]
Length = 81
Score = 97.4 bits (241), Expect(2) = 7e-29
Identities = 43/55 (78%), Positives = 52/55 (94%)
Frame = -3
Query: 336 KDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAIDRLWQKKKAEIKQ 172
KDHASVQINIGHLD +G+Y+G F+T+AL G++RAQGDADS++DRLWQKKKAEIKQ
Sbjct: 27 KDHASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDADSSLDRLWQKKKAEIKQ 81
Score = 50.1 bits (118), Expect(2) = 7e-29
Identities = 21/27 (77%), Positives = 25/27 (91%)
Frame = -2
Query: 415 MQNEEGQITELYIPRKCSATNRLITAK 335
MQNEEG+ +LY+PRKCSATNR+ITAK
Sbjct: 1 MQNEEGKTVDLYVPRKCSATNRIITAK 27
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 362,459,132
Number of Sequences: 1393205
Number of extensions: 7338093
Number of successful extensions: 17663
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 16928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17599
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
