Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020470A_C01 KMC020470A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM01138.1|AC108884_20 Putative transposase [Oryza sativa (ja... 35 0.64
ref|NP_216737.1| glnE [Mycobacterium tuberculosis H37Rv] gi|1707... 35 0.64
ref|NP_336750.1| glutamate-ammonia-ligase adenylyltransferase, p... 35 0.64
gb|AAK95676.1|AC087723_9 Putative retrotransposable elements TNP... 32 4.2
gb|AAO37998.1| putative TNP-like transposable element [Oryza sat... 32 4.2
>gb|AAM01138.1|AC108884_20 Putative transposase [Oryza sativa (japonica cultivar-group)]
Length = 997
Score = 34.7 bits (78), Expect = 0.64
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = -3
Query: 445 PSLKRDLCSLKRAEYFSVKKMLSLKRI*SSLKRAKPSGTLIKGQNTISSILHHFSSLKNS 266
P+ R++C +R Y V K S R RAKP G++I+G T +I + + ++
Sbjct: 679 PAFLREMCPFER--YMGVLK--SYVR-----NRAKPEGSIIEGYTTEEAIEFCVNYMSDA 729
Query: 265 EEAGL----HGGRVSGLGIDG 215
+ G+ H GR+SG+G G
Sbjct: 730 DPIGVPASRHEGRLSGVGTIG 750
>ref|NP_216737.1| glnE [Mycobacterium tuberculosis H37Rv]
gi|1707970|sp|Q10379|GLNE_MYCTU Probable
glutamate-ammonia-ligase adenylyltransferase
(Glutamine-synthetase adenylyltransferase) (ATASE)
gi|7478089|pir||A70776 probable glnE - Mycobacterium
tuberculosis (strain H37RV) gi|1261923|emb|CAA94664.1|
glnE [Mycobacterium tuberculosis H37Rv]
Length = 994
Score = 34.7 bits (78), Expect = 0.64
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 189 VVTMLQSSTPSIPSPETLPP*SPASSEFFREEKW*RMEE----IVFWPFIRVPDGLARLR 356
VVT L + P +PS L P + E + W R E+ + W R PD A LR
Sbjct: 2 VVTKLATQRPKLPSVGRLGLVDPPAGERLAQLGWDRHEDQAHVDLLWSLSRAPDADAALR 61
Query: 357 ELQIRLSES 383
L IRLSE+
Sbjct: 62 AL-IRLSEN 69
>ref|NP_336750.1| glutamate-ammonia-ligase adenylyltransferase, putative
[Mycobacterium tuberculosis CDC1551]
gi|13881970|gb|AAK46564.1| glutamate-ammonia-ligase
adenylyltransferase, putative [Mycobacterium
tuberculosis CDC1551]
Length = 994
Score = 34.7 bits (78), Expect = 0.64
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 189 VVTMLQSSTPSIPSPETLPP*SPASSEFFREEKW*RMEE----IVFWPFIRVPDGLARLR 356
VVT L + P +PS L P + E + W R E+ + W R PD A LR
Sbjct: 2 VVTKLATQRPKLPSVGRLGLVDPPAGERLAQLGWDRHEDQAHVDLLWSLSRAPDADAALR 61
Query: 357 ELQIRLSES 383
L IRLSE+
Sbjct: 62 AL-IRLSEN 69
>gb|AAK95676.1|AC087723_9 Putative retrotransposable elements TNP2 [Oryza sativa]
Length = 808
Score = 32.0 bits (71), Expect = 4.2
Identities = 17/49 (34%), Positives = 29/49 (58%), Gaps = 4/49 (8%)
Frame = -3
Query: 349 RAKPSGTLIKGQNTISSILHHFSSLKNSEEAGL----HGGRVSGLGIDG 215
RAKP G++I+G T +I + + +++ G+ H GR+SG+G G
Sbjct: 122 RAKPEGSIIEGYTTEEAIEFCVNYMSDADPIGVPASRHEGRLSGVGTIG 170
>gb|AAO37998.1| putative TNP-like transposable element [Oryza sativa (japonica
cultivar-group)]
Length = 883
Score = 32.0 bits (71), Expect = 4.2
Identities = 17/49 (34%), Positives = 29/49 (58%), Gaps = 4/49 (8%)
Frame = -3
Query: 349 RAKPSGTLIKGQNTISSILHHFSSLKNSEEAGL----HGGRVSGLGIDG 215
RAKP G++I+G T +I + + +++ G+ H GR+SG+G G
Sbjct: 595 RAKPEGSIIEGYTTEEAIEFCVNYMSDADPIGVPASRHEGRLSGVGTIG 643
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,354,325
Number of Sequences: 1393205
Number of extensions: 8454140
Number of successful extensions: 23710
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23685
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
