Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020469A_C01 KMC020469A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T49014 hypothetical protein F3C22.10 - Arabidopsis thaliana... 177 7e-44
gb|AAK59422.1| unknown protein [Arabidopsis thaliana] 177 7e-44
ref|NP_566970.1| expressed protein; protein id: At3g52610.1, sup... 177 7e-44
dbj|BAB63795.1| P0423B08.4 [Oryza sativa (japonica cultivar-grou... 164 5e-40
dbj|BAB98811.1| NTP pyrophosphohydrolases including oxidative da... 37 0.12
>pir||T49014 hypothetical protein F3C22.10 - Arabidopsis thaliana
gi|7669935|emb|CAB89222.1| putative protein [Arabidopsis
thaliana]
Length = 465
Score = 177 bits (449), Expect = 7e-44
Identities = 82/137 (59%), Positives = 106/137 (76%), Gaps = 1/137 (0%)
Frame = -1
Query: 538 GGESLWELAKRTYGALPNAKNNGKHFSDMADMNFLMCKAIENPGLTSSSSLRTSIISVFE 359
G E LW+LAKR Y + ++KN+ K F+DM+D+NFLMCKAIENP LT SSSLRT+ IS+FE
Sbjct: 327 GEEKLWDLAKRCYDSFTSSKNSNKQFTDMSDLNFLMCKAIENPNLTPSSSLRTAFISIFE 386
Query: 358 DTVIDDGGE-KYREIGLEDYMGCASVHGVGPSIAMFHTIRDGALDCLWVYPAPLHSREQM 182
D VID+ E + +G++DY+GCAS+HGVGPS+A+F +RDG LDC +VYP+PLHSREQM
Sbjct: 387 DPVIDESPEPELASLGVQDYIGCASIHGVGPSVAVFDALRDGKLDCAFVYPSPLHSREQM 446
Query: 181 QDLVNKTKAILIEAGKS 131
L+ K IL+E S
Sbjct: 447 DGLIQHMKTILLEGSAS 463
>gb|AAK59422.1| unknown protein [Arabidopsis thaliana]
Length = 475
Score = 177 bits (449), Expect = 7e-44
Identities = 82/137 (59%), Positives = 106/137 (76%), Gaps = 1/137 (0%)
Frame = -1
Query: 538 GGESLWELAKRTYGALPNAKNNGKHFSDMADMNFLMCKAIENPGLTSSSSLRTSIISVFE 359
G E LW+LAKR Y + ++KN+ K F+DM+D+NFLMCKAIENP LT SSSLRT+ IS+FE
Sbjct: 337 GEEKLWDLAKRCYDSFTSSKNSNKQFTDMSDLNFLMCKAIENPNLTPSSSLRTAFISIFE 396
Query: 358 DTVIDDGGE-KYREIGLEDYMGCASVHGVGPSIAMFHTIRDGALDCLWVYPAPLHSREQM 182
D VID+ E + +G++DY+GCAS+HGVGPS+A+F +RDG LDC +VYP+PLHSREQM
Sbjct: 397 DPVIDESPEPELASLGVQDYIGCASIHGVGPSVAVFDALRDGKLDCAFVYPSPLHSREQM 456
Query: 181 QDLVNKTKAILIEAGKS 131
L+ K IL+E S
Sbjct: 457 DGLIQHMKTILLEGSAS 473
>ref|NP_566970.1| expressed protein; protein id: At3g52610.1, supported by cDNA:
gi_14334447 [Arabidopsis thaliana]
gi|23296330|gb|AAN13043.1| unknown protein [Arabidopsis
thaliana]
Length = 475
Score = 177 bits (449), Expect = 7e-44
Identities = 82/137 (59%), Positives = 106/137 (76%), Gaps = 1/137 (0%)
Frame = -1
Query: 538 GGESLWELAKRTYGALPNAKNNGKHFSDMADMNFLMCKAIENPGLTSSSSLRTSIISVFE 359
G E LW+LAKR Y + ++KN+ K F+DM+D+NFLMCKAIENP LT SSSLRT+ IS+FE
Sbjct: 337 GEEKLWDLAKRCYDSFTSSKNSNKQFTDMSDLNFLMCKAIENPNLTPSSSLRTAFISIFE 396
Query: 358 DTVIDDGGE-KYREIGLEDYMGCASVHGVGPSIAMFHTIRDGALDCLWVYPAPLHSREQM 182
D VID+ E + +G++DY+GCAS+HGVGPS+A+F +RDG LDC +VYP+PLHSREQM
Sbjct: 397 DPVIDESPEPELASLGVQDYIGCASIHGVGPSVAVFDALRDGKLDCAFVYPSPLHSREQM 456
Query: 181 QDLVNKTKAILIEAGKS 131
L+ K IL+E S
Sbjct: 457 DGLIQHMKTILLEGSAS 473
>dbj|BAB63795.1| P0423B08.4 [Oryza sativa (japonica cultivar-group)]
gi|20521257|dbj|BAB91773.1| P0679C12.25 [Oryza sativa
(japonica cultivar-group)]
Length = 490
Score = 164 bits (416), Expect = 5e-40
Identities = 78/143 (54%), Positives = 108/143 (74%), Gaps = 4/143 (2%)
Frame = -1
Query: 538 GGESLWELAKRTYGALPNAKNNGKHFSDMADMNFLMCKAIENPGLTSSSSLRTSIISVFE 359
GGE LWELAKR + NAKNN KH +D+AD+NFLMC+AIENP LT+ S+LRT+++SVFE
Sbjct: 346 GGEELWELAKRCQDSYTNAKNNKKHLTDIADLNFLMCRAIENPQLTTGSALRTAVVSVFE 405
Query: 358 DTVIDDGGEKYREIGLEDYMGCASVHGVGPSIAMFHTIRDGALDCLWVYPAPLHSREQMQ 179
+ V+ D + + G+E+++ CA+VHGVGPSI +F +IRDG L+ +YP PLHSR+QMQ
Sbjct: 406 EPVVYDLSDLQSKAGVEEFVCCATVHGVGPSIGLFDSIRDGQLEFACMYPCPLHSRKQMQ 465
Query: 178 DLVNKTKAILIEAG----KSYQD 122
+++NK K IL E +S++D
Sbjct: 466 EILNKVKQILHEGSIGDDESFED 488
>dbj|BAB98811.1| NTP pyrophosphohydrolases including oxidative damage repair enzymes
[Corynebacterium glutamicum ATCC 13032]
Length = 219
Score = 37.4 bits (85), Expect = 0.12
Identities = 26/84 (30%), Positives = 37/84 (43%)
Frame = -1
Query: 388 LRTSIISVFEDTVIDDGGEKYREIGLEDYMGCASVHGVGPSIAMFHTIRDGALDCLWVYP 209
L + I+ V D++I GG R +E + A V G +IAM R D LW P
Sbjct: 18 LESPILGVRRDSLIMPGGSTARREVVEHFGAVAVVAFDGENIAMVKQYRRSVGDSLWELP 77
Query: 208 APLHSREQMQDLVNKTKAILIEAG 137
A L +L + ++ EAG
Sbjct: 78 AGLLDIADEDELTGAQRELMEEAG 101
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,107,563
Number of Sequences: 1393205
Number of extensions: 10567676
Number of successful extensions: 24838
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24828
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
