Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020467A_C01 KMC020467A_c01
(452 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182243.2| hypothetical protein; protein id: At2g47210.1, ... 62 3e-09
pir||D84912 hypothetical protein At2g47210 [imported] - Arabidop... 56 2e-07
>ref|NP_182243.2| hypothetical protein; protein id: At2g47210.1, supported by cDNA:
gi_17381135, supported by cDNA: gi_20465554 [Arabidopsis
thaliana] gi|17381136|gb|AAL36380.1| unknown protein
[Arabidopsis thaliana] gi|20465555|gb|AAM20260.1|
unknown protein [Arabidopsis thaliana]
Length = 441
Score = 62.0 bits (149), Expect = 3e-09
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -1
Query: 446 QDRTFVPDSTSFGGERIGKRDQKRKAPGRLSEAPSPVQSKRPRKQKASDL 297
+DR F PD SFG ER K++QKRK PGR ++ PSP KRPRK KASDL
Sbjct: 393 KDRVFAPDPFSFGAERPIKKEQKRKGPGRQADTPSPAH-KRPRKLKASDL 441
>pir||D84912 hypothetical protein At2g47210 [imported] - Arabidopsis thaliana
gi|2275199|gb|AAB63821.1| hypothetical protein
[Arabidopsis thaliana]
Length = 486
Score = 55.8 bits (133), Expect = 2e-07
Identities = 31/55 (56%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Frame = -1
Query: 446 QDRTFVPDSTSFGGERIGKRDQKRK-----APGRLSEAPSPVQSKRPRKQKASDL 297
+DR F PD SFG ER K++QKRK PGR ++ PSP KRPRK KASDL
Sbjct: 433 KDRVFAPDPFSFGAERPIKKEQKRKVVHIRGPGRQADTPSPAH-KRPRKLKASDL 486
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 366,214,059
Number of Sequences: 1393205
Number of extensions: 6935881
Number of successful extensions: 16017
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16004
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
