Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020464A_C01 KMC020464A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567384.1| putative protein; protein id: At4g11980.1, supp... 139 3e-32
pir||T06605 hypothetical protein F16J13.50 - Arabidopsis thalian... 139 3e-32
dbj|BAA83368.1| ESTs AU029348(E30206),C74035(E30206) correspond ... 128 4e-29
gb|EAA37795.1| GLP_549_31342_32085 [Giardia lamblia ATCC 50803] 41 0.009
ref|NP_747022.1| MutT/nudix family protein [Pseudomonas putida K... 41 0.009
>ref|NP_567384.1| putative protein; protein id: At4g11980.1, supported by cDNA:
gi_15450340 [Arabidopsis thaliana]
gi|15450341|gb|AAK96464.1| AT4g11980/F16J13_50
[Arabidopsis thaliana] gi|24797050|gb|AAN64537.1|
At4g11980/F16J13_50 [Arabidopsis thaliana]
Length = 309
Score = 139 bits (349), Expect = 3e-32
Identities = 61/83 (73%), Positives = 75/83 (89%)
Frame = -1
Query: 514 STGYRVFPSPGGCDEEISIFLYRGRVDKEIITQLQGKETGLREHGELIKVRVVPYKNLWR 335
STGYR+FPSPGGCDEE+S+FLYRG+V+KE I QLQGKETGLREHGE IKVR++PY+ LWR
Sbjct: 218 STGYRIFPSPGGCDEEMSVFLYRGQVEKETIRQLQGKETGLREHGEFIKVRLIPYRELWR 277
Query: 334 STADCKVLVAVALFEMATKEGLL 266
TAD KVL+++ L+EMA +EGL+
Sbjct: 278 KTADAKVLMSIGLYEMAQREGLV 300
>pir||T06605 hypothetical protein F16J13.50 - Arabidopsis thaliana
gi|4586103|emb|CAB40939.1| putative protein [Arabidopsis
thaliana] gi|7267899|emb|CAB78241.1| putative protein
[Arabidopsis thaliana]
Length = 310
Score = 139 bits (349), Expect = 3e-32
Identities = 61/83 (73%), Positives = 75/83 (89%)
Frame = -1
Query: 514 STGYRVFPSPGGCDEEISIFLYRGRVDKEIITQLQGKETGLREHGELIKVRVVPYKNLWR 335
STGYR+FPSPGGCDEE+S+FLYRG+V+KE I QLQGKETGLREHGE IKVR++PY+ LWR
Sbjct: 219 STGYRIFPSPGGCDEEMSVFLYRGQVEKETIRQLQGKETGLREHGEFIKVRLIPYRELWR 278
Query: 334 STADCKVLVAVALFEMATKEGLL 266
TAD KVL+++ L+EMA +EGL+
Sbjct: 279 KTADAKVLMSIGLYEMAQREGLV 301
>dbj|BAA83368.1| ESTs AU029348(E30206),C74035(E30206) correspond to a region of the
predicted gene.~Similar to lipase (U38916) [Oryza sativa
(japonica cultivar-group)]
Length = 325
Score = 128 bits (321), Expect = 4e-29
Identities = 58/83 (69%), Positives = 69/83 (82%)
Frame = -1
Query: 511 TGYRVFPSPGGCDEEISIFLYRGRVDKEIITQLQGKETGLREHGELIKVRVVPYKNLWRS 332
TG R+ PSPGGCDEEI +FLYRG D++ + LQGKETGLR+HGELIK+RVVPY LWR+
Sbjct: 226 TGCRMLPSPGGCDEEIGLFLYRGHADEDTLRALQGKETGLRDHGELIKLRVVPYSQLWRA 285
Query: 331 TADCKVLVAVALFEMATKEGLLP 263
TAD K L A+AL+EMA +EGLLP
Sbjct: 286 TADAKALSAIALYEMAKREGLLP 308
>gb|EAA37795.1| GLP_549_31342_32085 [Giardia lamblia ATCC 50803]
Length = 247
Score = 40.8 bits (94), Expect = 0.009
Identities = 23/69 (33%), Positives = 36/69 (51%)
Frame = -1
Query: 496 FPSPGGCDEEISIFLYRGRVDKEIITQLQGKETGLREHGELIKVRVVPYKNLWRSTADCK 317
+ SPGG DE +S++ V K+ + L G+ TG+ H E I VR+ D K
Sbjct: 166 YTSPGGSDELLSLYYTEKSVSKDFLENLAGRLTGVGPH-ERIIVRLTKLAGSLEKLTDGK 224
Query: 316 VLVAVALFE 290
L+A+ L++
Sbjct: 225 SLLAILLYD 233
>ref|NP_747022.1| MutT/nudix family protein [Pseudomonas putida KT2440]
gi|24986687|gb|AAN70486.1|AE016690_2 MutT/nudix family
protein [Pseudomonas putida KT2440]
Length = 209
Score = 40.8 bits (94), Expect = 0.009
Identities = 26/69 (37%), Positives = 37/69 (52%)
Frame = -1
Query: 502 RVFPSPGGCDEEISIFLYRGRVDKEIITQLQGKETGLREHGELIKVRVVPYKNLWRSTAD 323
R FPSPGG DE + +FL GR E L GL E GE I+VRV +++ ++ D
Sbjct: 129 RYFPSPGGSDEYVHLFL--GRCSSEGAGGLH----GLEEEGEDIRVRVWAFEDALQAVRD 182
Query: 322 CKVLVAVAL 296
++ A +
Sbjct: 183 GRICNAATI 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,809,028
Number of Sequences: 1393205
Number of extensions: 9126148
Number of successful extensions: 21541
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 20964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21536
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
