Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020462A_C01 KMC020462A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_050793.2| similar to KIAA1393 protein [Homo sapiens] 62 4e-09
dbj|BAB46864.1| hypothetical protein [Macaca fascicularis] 62 4e-09
ref|NP_083856.1| RIKEN cDNA 2610027O18 [Mus musculus] gi|1284779... 62 6e-09
dbj|BAA92631.1| KIAA1393 protein [Homo sapiens] 60 1e-08
dbj|BAC00747.1| contains EST AU056071(S20265)~unknown protein [O... 54 2e-06
>ref|XP_050793.2| similar to KIAA1393 protein [Homo sapiens]
Length = 509
Score = 62.0 bits (149), Expect = 4e-09
Identities = 34/90 (37%), Positives = 50/90 (54%), Gaps = 9/90 (10%)
Frame = -2
Query: 538 ERKIKVFNMDGRRFIKAIYASDKAQSI---------TQVVMNLPNDAAEFLDAFRGIYKD 386
++K+KVFN+DG+ F++ + Q + VVMNLP A EFL AF+ +
Sbjct: 346 DQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDG 405
Query: 385 RPKDGEFTLPMIHVYGFSKARDPEFDFHER 296
+P EF LP++H Y FSK +P D +R
Sbjct: 406 QPCSSEF-LPIVHCYSFSKDANPAEDVRQR 434
>dbj|BAB46864.1| hypothetical protein [Macaca fascicularis]
Length = 509
Score = 62.0 bits (149), Expect = 4e-09
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Frame = -2
Query: 538 ERKIKVFNMDGRRF---------IKAIYASDKAQSITQVVMNLPNDAAEFLDAFRGIYKD 386
++K+K+FN+DG+ F I+ + S + + +VMNLP A EFL AF+ +
Sbjct: 346 DQKVKIFNLDGKDFLQGPVKEELIQLLSLSKERKPSVHIVMNLPAKAIEFLSAFKWLLDG 405
Query: 385 RPKDGEFTLPMIHVYGFSKARDPEFDFHER 296
+P EF LP++H Y FSK +P D +R
Sbjct: 406 QPCSNEF-LPIVHCYSFSKDANPAKDVRQR 434
>ref|NP_083856.1| RIKEN cDNA 2610027O18 [Mus musculus] gi|12847791|dbj|BAB27710.1|
unnamed protein product [Mus musculus]
gi|15214776|gb|AAH12521.1| RIKEN cDNA 2610027O18 gene
[Mus musculus]
Length = 501
Score = 61.6 bits (148), Expect = 6e-09
Identities = 36/95 (37%), Positives = 50/95 (51%), Gaps = 9/95 (9%)
Frame = -2
Query: 538 ERKIKVFNMDGRRFIKA---------IYASDKAQSITQVVMNLPNDAAEFLDAFRGIYKD 386
++K+KVFNMDG+ FI+ + S +A+ +VMNLP A EFL FR +
Sbjct: 339 DQKVKVFNMDGKDFIQGPVREELMLRLGLSAEAKPSVHIVMNLPAKAIEFLSVFRSLLDG 398
Query: 385 RPKDGEFTLPMIHVYGFSKARDPEFDFHERIRIAL 281
+P E LP +H Y FSK DP D ++ L
Sbjct: 399 QPCSTEL-LPTVHCYCFSKDSDPAKDVRQQAEAVL 432
>dbj|BAA92631.1| KIAA1393 protein [Homo sapiens]
Length = 500
Score = 60.5 bits (145), Expect = 1e-08
Identities = 33/90 (36%), Positives = 50/90 (54%), Gaps = 9/90 (10%)
Frame = -2
Query: 538 ERKIKVFNMDGRRFIKAIYASDKAQSI---------TQVVMNLPNDAAEFLDAFRGIYKD 386
++K+KVFN+DG+ F++ + Q + VVMNLP A +FL AF+ +
Sbjct: 337 DQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIKFLSAFKWLLDG 396
Query: 385 RPKDGEFTLPMIHVYGFSKARDPEFDFHER 296
+P EF LP++H Y FSK +P D +R
Sbjct: 397 QPCSSEF-LPIVHCYSFSKDANPAEDVRQR 425
>dbj|BAC00747.1| contains EST AU056071(S20265)~unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 93
Score = 53.5 bits (127), Expect = 2e-06
Identities = 36/82 (43%), Positives = 45/82 (53%), Gaps = 3/82 (3%)
Frame = -2
Query: 412 DAFRGI-YKDRPKDGEFTLPMIHVYGFSKARDPEFDFHERIRIALLRSAPLNVRNADGYD 236
D FRGI + +P IHVYGFSKA DPE+DFHERI + L NV + + +
Sbjct: 7 DVFRGISWNHHLAVPSCVMPNIHVYGFSKAEDPEYDFHERINLTLGE----NVSDVEMHR 62
Query: 235 LLLLE--NWMLWAHHFILPHKV 176
+ L+ WML A F LP V
Sbjct: 63 VRLVAPGKWMLCA-SFTLPVSV 83
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,858,683
Number of Sequences: 1393205
Number of extensions: 9788386
Number of successful extensions: 20842
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 20433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20819
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
