Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020433A_C01 KMC020433A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL47679.1| aminotransferase 1 [Cucumis melo] 249 1e-65
ref|NP_178969.1| alanine-glyoxylate aminotransferase; protein id... 246 1e-64
gb|AAL62332.1|AF461048_1 aminotransferase 2 [Cucumis melo] 246 1e-64
gb|AAB95218.1| putative serine-glyoxylate aminotransferase [Frit... 243 9e-64
sp|P55819|SGAA_METEX SERINE--GLYOXYLATE AMINOTRANSFERASE (SGAT) 150 6e-36
>gb|AAL47679.1| aminotransferase 1 [Cucumis melo]
Length = 401
Score = 249 bits (636), Expect = 1e-65
Identities = 119/136 (87%), Positives = 129/136 (94%)
Frame = +3
Query: 105 MDYFNAPGRHHLFVPGPVNIPEQVIRAMNRNNEDYRAPAIPALTKTLLEDVKKIFKTTTG 284
MDY APG++HLFVPGPVNIPE V+RAMNRNNEDYR+PA+PALTKTLLEDVKKIFK+TTG
Sbjct: 1 MDYVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKSTTG 60
Query: 285 TPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGRG 464
T FLIPTTGTGAWESALTNTLSPGDR VSFLIGQFSLLWIDQQQRLNFNVDVVES+WG+G
Sbjct: 61 TTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQG 120
Query: 465 ADLDVLESKLASDSAH 512
A+LDVLESKLA+D H
Sbjct: 121 ANLDVLESKLATDGGH 136
>ref|NP_178969.1| alanine-glyoxylate aminotransferase; protein id: At2g13360.1,
supported by cDNA: 8306., supported by cDNA:
gi_12082306, supported by cDNA: gi_20465424, supported
by cDNA: gi_21281088, supported by cDNA: gi_3288820
[Arabidopsis thaliana] gi|25287370|pir||T52250 probable
alanine-glyoxylate transaminase (EC 2.6.1.44) [imported]
- Arabidopsis thaliana gi|3288821|gb|AAC26854.1|
alanine:glyoxylate aminotransferase; transaminase
[Arabidopsis thaliana] gi|4733989|gb|AAD28669.1|
alanine-glyoxylate aminotransferase [Arabidopsis
thaliana] gi|12082307|dbj|BAB20811.1| serine glyoxylate
aminotransferase [Arabidopsis thaliana]
gi|20465425|gb|AAM20136.1| putative alanine-glyoxylate
aminotransferase [Arabidopsis thaliana]
gi|21281089|gb|AAM45058.1| putative alanine-glyoxylate
aminotransferase [Arabidopsis thaliana]
Length = 401
Score = 246 bits (628), Expect = 1e-64
Identities = 118/136 (86%), Positives = 125/136 (91%)
Frame = +3
Query: 105 MDYFNAPGRHHLFVPGPVNIPEQVIRAMNRNNEDYRAPAIPALTKTLLEDVKKIFKTTTG 284
MDY PGRHHLFVPGPVNIPE VIRAMNRNNEDYR+PAIPALTKTLLEDVKKIFKTT+G
Sbjct: 1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60
Query: 285 TPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGRG 464
TPFL PTTGTGAWESALTNTLSPGDR VSFLIGQFSLLWIDQQ+RLNFNVDVVES+WG+G
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120
Query: 465 ADLDVLESKLASDSAH 512
A+L VL SKL+ D H
Sbjct: 121 ANLQVLASKLSQDENH 136
>gb|AAL62332.1|AF461048_1 aminotransferase 2 [Cucumis melo]
Length = 401
Score = 246 bits (628), Expect = 1e-64
Identities = 117/136 (86%), Positives = 126/136 (92%)
Frame = +3
Query: 105 MDYFNAPGRHHLFVPGPVNIPEQVIRAMNRNNEDYRAPAIPALTKTLLEDVKKIFKTTTG 284
MDY PGR+HLFVPGPVNIPEQV+RAMNRNNEDYR+PA+PALTKTLLEDVKKIFKTT+G
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60
Query: 285 TPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGRG 464
TPFL PTTGTGAWESALTNTLSPGDR VSFLIGQFSLLWIDQQQRLNF VDV+ESEWG G
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120
Query: 465 ADLDVLESKLASDSAH 512
A LDVL +KLA+D+ H
Sbjct: 121 AKLDVLAAKLAADTDH 136
>gb|AAB95218.1| putative serine-glyoxylate aminotransferase [Fritillaria agrestis]
Length = 401
Score = 243 bits (620), Expect = 9e-64
Identities = 117/136 (86%), Positives = 124/136 (91%)
Frame = +3
Query: 105 MDYFNAPGRHHLFVPGPVNIPEQVIRAMNRNNEDYRAPAIPALTKTLLEDVKKIFKTTTG 284
MDY PGR+HLFVPGPVNIPE VIRAMNRNNEDYRAPAIPALTKTLLEDVKK+FKTTTG
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEPVIRAMNRNNEDYRAPAIPALTKTLLEDVKKLFKTTTG 60
Query: 285 TPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGRG 464
TPF+IPTTGTGAWESALTNTLSPGD VSFLIGQFSLLWIDQQQRL F VDV+ESEWG+G
Sbjct: 61 TPFIIPTTGTGAWESALTNTLSPGDTIVSFLIGQFSLLWIDQQQRLKFKVDVIESEWGQG 120
Query: 465 ADLDVLESKLASDSAH 512
A+LD L SKLA+D H
Sbjct: 121 ANLDELASKLAADRTH 136
>sp|P55819|SGAA_METEX SERINE--GLYOXYLATE AMINOTRANSFERASE (SGAT)
Length = 379
Score = 150 bits (380), Expect = 6e-36
Identities = 72/130 (55%), Positives = 92/130 (70%)
Frame = +3
Query: 123 PGRHHLFVPGPVNIPEQVIRAMNRNNEDYRAPAIPALTKTLLEDVKKIFKTTTGTPFLIP 302
PGR+HLFVPGP NIP++V+RAM +ED+R+ P+LTK L ED KK+F +T GT FL P
Sbjct: 2 PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVFGSTEGTIFLFP 61
Query: 303 TTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGRGADLDVL 482
+GTG WESAL+NTL+ GD+ ++ GQFS LWID QRL +V V E EWG GA + +
Sbjct: 62 ASGTGIWESALSNTLARGDKVLAARFGQFSHLWIDMAQRLGLDVVVQEEEWGTGAKPEKI 121
Query: 483 ESKLASDSAH 512
E L +D H
Sbjct: 122 EEALRADKNH 131
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,158,657
Number of Sequences: 1393205
Number of extensions: 10069292
Number of successful extensions: 30782
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 29858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30724
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
