Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020375A_C01 KMC020375A_c01
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193006.1| putative protein; protein id: At4g12700.1 [Arab... 166 3e-40
ref|NP_565310.1| expressed protein; protein id: At2g04280.1, sup... 154 1e-36
ref|NP_192621.1| putative protein; protein id: At4g08810.1, supp... 79 7e-14
dbj|BAC07112.1| contains ESTs C73312(E3729),AU094248(E3729)~simi... 65 8e-10
ref|NP_704954.1| hypothetical protein [Plasmodium falciparum 3D7... 35 1.1
>ref|NP_193006.1| putative protein; protein id: At4g12700.1 [Arabidopsis thaliana]
gi|7487274|pir||T06628 hypothetical protein T20K18.50 -
Arabidopsis thaliana gi|4586246|emb|CAB40987.1| putative
protein [Arabidopsis thaliana]
gi|7267971|emb|CAB78312.1| putative protein [Arabidopsis
thaliana]
Length = 561
Score = 166 bits (419), Expect = 3e-40
Identities = 80/110 (72%), Positives = 96/110 (86%)
Frame = +3
Query: 288 MLGRSAFSRAGSFRPENLGQNTMAMIGNVCFSVFVVGVLVFTIMAATYEPEDPLFNPSTK 467
M GRSAFSR G FRPENLGQN +++IG++ FSV V+GV+VFTI+AATYEPEDPLF+PS K
Sbjct: 1 MSGRSAFSRTGGFRPENLGQNAVSLIGSIGFSVLVIGVVVFTIIAATYEPEDPLFHPSDK 60
Query: 468 ISTFLTSKSNATFKSDDSVVRTGEDFMAANETAFGTIINMADVDNSASAS 617
I+TFLTS SNAT KSDDS+V+TGEDFMAAN+TAFG IN+ADV+ S + S
Sbjct: 61 ITTFLTSNSNATLKSDDSIVKTGEDFMAANQTAFGGFINIADVETSENDS 110
>ref|NP_565310.1| expressed protein; protein id: At2g04280.1, supported by cDNA:
gi_15810336 [Arabidopsis thaliana]
gi|25365943|pir||G84455 hypothetical protein At2g04280
[imported] - Arabidopsis thaliana
gi|4689474|gb|AAD27910.1| expressed protein [Arabidopsis
thaliana] gi|15810337|gb|AAL07056.1| unknown protein
[Arabidopsis thaliana]
Length = 568
Score = 154 bits (389), Expect = 1e-36
Identities = 77/115 (66%), Positives = 92/115 (79%)
Frame = +3
Query: 288 MLGRSAFSRAGSFRPENLGQNTMAMIGNVCFSVFVVGVLVFTIMAATYEPEDPLFNPSTK 467
M GRSA R G FR ENLGQN + +IGN+ FS+FV GVL+FTI+AATYEPEDPLF+PS K
Sbjct: 1 MFGRSAI-RGGGFRAENLGQNALTLIGNIGFSLFVFGVLIFTIIAATYEPEDPLFHPSDK 59
Query: 468 ISTFLTSKSNATFKSDDSVVRTGEDFMAANETAFGTIINMADVDNSASASTAEAE 632
I+TFLTS SNAT +SDDSVV+TGEDFM AN+TAF IN+ DV+ S + +T E E
Sbjct: 60 ITTFLTSTSNATLRSDDSVVKTGEDFMLANQTAFAEFININDVEASTNETTTEEE 114
>ref|NP_192621.1| putative protein; protein id: At4g08810.1, supported by cDNA:
gi_15912228 [Arabidopsis thaliana]
gi|25365941|pir||F85088 hypothetical protein AT4g08810
[imported] - Arabidopsis thaliana
gi|7267523|emb|CAB78006.1| putative protein [Arabidopsis
thaliana] gi|7321070|emb|CAB82117.1| putative protein
[Arabidopsis thaliana] gi|15912229|gb|AAL08248.1|
AT4g08810/T32A17_120 [Arabidopsis thaliana]
gi|27363304|gb|AAO11571.1| At4g08810/T32A17_120
[Arabidopsis thaliana]
Length = 552
Score = 78.6 bits (192), Expect = 7e-14
Identities = 35/74 (47%), Positives = 50/74 (67%)
Frame = +3
Query: 333 ENLGQNTMAMIGNVCFSVFVVGVLVFTIMAATYEPEDPLFNPSTKISTFLTSKSNATFKS 512
E + QN + +I NVCFSVFV VL+FT++A TY+P DP + ++ LT NATFK
Sbjct: 9 EPIAQNLIKLISNVCFSVFVFTVLIFTVIAVTYQPPDPWLESAPALTKLLTETENATFKI 68
Query: 513 DDSVVRTGEDFMAA 554
D S+++TGED ++
Sbjct: 69 DGSILKTGEDLASS 82
>dbj|BAC07112.1| contains ESTs C73312(E3729),AU094248(E3729)~similar to Arabidopsis
thaliana chromosome 4, At4g08810~unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|22296387|dbj|BAC10156.1| P0519E12.32 [Oryza sativa
(japonica cultivar-group)]
Length = 585
Score = 65.1 bits (157), Expect = 8e-10
Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Frame = +3
Query: 339 LGQNTMAMIGNVCFSVFVVGVLVFTIMAATYEPEDPLFNPSTKISTFLTS-KSNATF-KS 512
+ Q+ + NVCFS+FV+ VLV T++A TY+P DP S I+T L+ N+TF
Sbjct: 41 VAQSIIKAASNVCFSLFVLAVLVVTVVAVTYQPPDPWLQSSAAITTSLSRVLPNSTFLLP 100
Query: 513 DDSVVRTGEDFMAANETAFGTIINMADVDNSASASTAEA 629
DDS++ TGEDF +++ T + D D + + +TA A
Sbjct: 101 DDSLLPTGEDFNSSSSTP--SAPRRDDPDQATATATAAA 137
>ref|NP_704954.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615199|emb|CAD52189.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 771
Score = 34.7 bits (78), Expect = 1.1
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = -2
Query: 452 KQRILRFISSSHNGKNQNPNNKHRKANIPNHG 357
K++++ +I+S+HN K QN NN++ I NHG
Sbjct: 355 KEQLICYINSTHNNKKQNMNNQNNILIICNHG 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,565,832
Number of Sequences: 1393205
Number of extensions: 12523006
Number of successful extensions: 43997
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 37083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43109
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
