Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020361A_C01 KMC020361A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06774 cell division protein, chloroplast - garden pea gi|3... 131 4e-30
gb|AAA82068.1| cpFtsZ 121 5e-27
ref|NP_200339.1| cell division protein FtsZ chloroplast homolog ... 121 5e-27
emb|CAB89287.1| chloroplast FtsZ-like protein [Nicotiana tabacum] 117 7e-26
emb|CAB41987.1| FtsZ-like protein [Nicotiana tabacum] 117 7e-26
>pir||T06774 cell division protein, chloroplast - garden pea
gi|3116020|emb|CAA75603.1| FtsZ protein [Pisum sativum]
Length = 423
Score = 131 bits (330), Expect = 4e-30
Identities = 69/89 (77%), Positives = 74/89 (82%), Gaps = 1/89 (1%)
Frame = -2
Query: 497 VTSLADPSANIIFGAVVDDRYNGEIHVTMIATGFSQSFQKTLLTDPRAAKLLDRLPGGQE 318
VTSLADPSANIIFGAVVDDRY GEIHVT+IATGFSQSFQK LLTDPRAAKLLD++ G+E
Sbjct: 335 VTSLADPSANIIFGAVVDDRYTGEIHVTIIATGFSQSFQKKLLTDPRAAKLLDKVAEGKE 394
Query: 317 SKATSPPLNASNIPSTVASR-ASPRKLFF 234
SK PPL +SN S V SR PRKLFF
Sbjct: 395 SKTVPPPLKSSNFSSKVESRPPPPRKLFF 423
>gb|AAA82068.1| cpFtsZ
Length = 433
Score = 121 bits (303), Expect = 5e-27
Identities = 66/91 (72%), Positives = 77/91 (84%), Gaps = 3/91 (3%)
Frame = -2
Query: 497 VTSLADPSANIIFGAVVDDRYNGEIHVTMIATGFSQSFQKTLLTDPRAAKLLDRL--PGG 324
VTSLADPSANIIFGAVVDDRY GEIHVT+IATGFSQSFQKTLLTDPRAAKLLD++ G
Sbjct: 344 VTSLADPSANIIFGAVVDDRYTGEIHVTIIATGFSQSFQKTLLTDPRAAKLLDKMGSSGQ 403
Query: 323 QESKATSPPLNASNIPSTVASR-ASPRKLFF 234
QE+K S P + PST++++ +SPR+LFF
Sbjct: 404 QENKGMSLP-HQKQSPSTISTKSSSPRRLFF 433
>ref|NP_200339.1| cell division protein FtsZ chloroplast homolog precursor
(sp|Q42545); protein id: At5g55280.1, supported by cDNA:
gi_1079731, supported by cDNA: gi_14334637, supported by
cDNA: gi_21280800 [Arabidopsis thaliana]
gi|21903428|sp|Q42545|FTSZ_ARATH Cell division protein
ftsZ homolog, chloroplast precursor
gi|9758125|dbj|BAB08597.1| cell division protein FtsZ
chloroplast homolog precursor [Arabidopsis thaliana]
gi|14334638|gb|AAK59497.1| putative cell division
protein FtsZ chloroplast homolog precursor [Arabidopsis
thaliana] gi|21280801|gb|AAM44944.1| putative cell
division protein FtsZ chloroplast homolog precursor
[Arabidopsis thaliana]
Length = 433
Score = 121 bits (303), Expect = 5e-27
Identities = 66/91 (72%), Positives = 77/91 (84%), Gaps = 3/91 (3%)
Frame = -2
Query: 497 VTSLADPSANIIFGAVVDDRYNGEIHVTMIATGFSQSFQKTLLTDPRAAKLLDRL--PGG 324
VTSLADPSANIIFGAVVDDRY GEIHVT+IATGFSQSFQKTLLTDPRAAKLLD++ G
Sbjct: 344 VTSLADPSANIIFGAVVDDRYTGEIHVTIIATGFSQSFQKTLLTDPRAAKLLDKMGSSGQ 403
Query: 323 QESKATSPPLNASNIPSTVASR-ASPRKLFF 234
QE+K S P + PST++++ +SPR+LFF
Sbjct: 404 QENKGMSLP-HQKQSPSTISTKSSSPRRLFF 433
>emb|CAB89287.1| chloroplast FtsZ-like protein [Nicotiana tabacum]
Length = 413
Score = 117 bits (293), Expect = 7e-26
Identities = 63/88 (71%), Positives = 71/88 (80%)
Frame = -2
Query: 497 VTSLADPSANIIFGAVVDDRYNGEIHVTMIATGFSQSFQKTLLTDPRAAKLLDRLPGGQE 318
VTSLADPSANIIFGAVVD+RYNGEIHVT+IATGF+QSFQKTLL+DPR AKL D+ P QE
Sbjct: 327 VTSLADPSANIIFGAVVDERYNGEIHVTIIATGFTQSFQKTLLSDPRGAKLADKGPVIQE 386
Query: 317 SKATSPPLNASNIPSTVASRASPRKLFF 234
S A+ L +S PST SR R+LFF
Sbjct: 387 SMASPVTLRSSTSPST-TSRTPTRRLFF 413
>emb|CAB41987.1| FtsZ-like protein [Nicotiana tabacum]
Length = 419
Score = 117 bits (293), Expect = 7e-26
Identities = 63/88 (71%), Positives = 71/88 (80%)
Frame = -2
Query: 497 VTSLADPSANIIFGAVVDDRYNGEIHVTMIATGFSQSFQKTLLTDPRAAKLLDRLPGGQE 318
VTSLADPSANIIFGAVVD+RYNGEIHVT+IATGF+QSFQKTLL+DPR AKL D+ P QE
Sbjct: 333 VTSLADPSANIIFGAVVDERYNGEIHVTIIATGFTQSFQKTLLSDPRGAKLADKGPVIQE 392
Query: 317 SKATSPPLNASNIPSTVASRASPRKLFF 234
S A+ L +S PST SR R+LFF
Sbjct: 393 SMASPVTLRSSTSPST-TSRTPTRRLFF 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,691,434
Number of Sequences: 1393205
Number of extensions: 8450778
Number of successful extensions: 24301
Number of sequences better than 10.0: 308
Number of HSP's better than 10.0 without gapping: 23688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24284
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
