Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020318A_C01 KMC020318A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199173.2| N-carbamyl-L-amino acid amidohydrolase-like pro... 202 1e-51
dbj|BAB11623.1| N-carbamyl-L-amino acid amidohydrolase-like prot... 192 1e-48
ref|NP_464065.1| similar to N-carbamyl-L-amino acid amidohydrola... 97 9e-20
ref|NP_469884.1| similar to N-carbamyl-L-amino acid amidohydrola... 96 3e-19
ref|NP_241627.1| N-carbamyl-L-amino acid amidohydrolase [Bacillu... 96 3e-19
>ref|NP_199173.2| N-carbamyl-L-amino acid amidohydrolase-like protein; protein id:
At5g43600.1, supported by cDNA: gi_18377778, supported
by cDNA: gi_20259220 [Arabidopsis thaliana]
gi|18377779|gb|AAL67039.1| putative N-carbamyl-L-amino
acid amidohydrolase [Arabidopsis thaliana]
gi|20259221|gb|AAM14326.1| putative N-carbamyl-L-amino
acid amidohydrolase [Arabidopsis thaliana]
Length = 476
Score = 202 bits (514), Expect = 1e-51
Identities = 106/143 (74%), Positives = 120/143 (83%), Gaps = 3/143 (2%)
Frame = +3
Query: 57 SAISSHQQHPSITATMEQFSGYKIHGPPH---TFIPTSLSVDAQGLQNQIDELSAFSDAP 227
S+++ QQH SI TME FSGY IH P + +SLSVDA GLQNQIDELS+FSDAP
Sbjct: 22 SSLAQQQQHESIR-TMEDFSGYPIHEPGQFGSINLASSLSVDAPGLQNQIDELSSFSDAP 80
Query: 228 APSVTRVLYTEKDVLARSYVKDLMGVAGLSVREDAVGNIFGRWEGQEPELAAVATGSHID 407
+PSVTRVLYT+KDV AR YVK+LM +AGL+VREDAVGNIFG+W+G EP L AVATGSHID
Sbjct: 81 SPSVTRVLYTDKDVSARRYVKNLMALAGLTVREDAVGNIFGKWDGLEPNLPAVATGSHID 140
Query: 408 AIPYSGKYDGVVGVLGAIEAISV 476
AIPYSGKYDGVVGVLGAIEAI+V
Sbjct: 141 AIPYSGKYDGVVGVLGAIEAINV 163
>dbj|BAB11623.1| N-carbamyl-L-amino acid amidohydrolase-like protein [Arabidopsis
thaliana]
Length = 441
Score = 192 bits (489), Expect = 1e-48
Identities = 99/128 (77%), Positives = 110/128 (85%), Gaps = 3/128 (2%)
Frame = +3
Query: 102 MEQFSGYKIHGPPH---TFIPTSLSVDAQGLQNQIDELSAFSDAPAPSVTRVLYTEKDVL 272
ME FSGY IH P + +SLSVDA GLQNQIDELS+FSDAP+PSVTRVLYT+KDV
Sbjct: 1 MEDFSGYPIHEPGQFGSINLASSLSVDAPGLQNQIDELSSFSDAPSPSVTRVLYTDKDVS 60
Query: 273 ARSYVKDLMGVAGLSVREDAVGNIFGRWEGQEPELAAVATGSHIDAIPYSGKYDGVVGVL 452
AR YVK+LM +AGL+VREDAVGNIFG+W+G EP L AVATGSHIDAIPYSGKYDGVVGVL
Sbjct: 61 ARRYVKNLMALAGLTVREDAVGNIFGKWDGLEPNLPAVATGSHIDAIPYSGKYDGVVGVL 120
Query: 453 GAIEAISV 476
GAIEAI+V
Sbjct: 121 GAIEAINV 128
>ref|NP_464065.1| similar to N-carbamyl-L-amino acid amidohydrolase [Listeria
monocytogenes EGD-e] gi|25290168|pir||AB1142
N-carbamyl-L-amino acid amidohydrolase homolog lmo0537
[imported] - Listeria monocytogenes (strain EGD-e)
gi|16409913|emb|CAC98616.1| similar to
N-carbamyl-L-amino acid amidohydrolase [Listeria
monocytogenes]
Length = 423
Score = 97.1 bits (240), Expect = 9e-20
Identities = 43/105 (40%), Positives = 68/105 (63%)
Frame = +3
Query: 162 LSVDAQGLQNQIDELSAFSDAPAPSVTRVLYTEKDVLARSYVKDLMGVAGLSVREDAVGN 341
+ + + ++ I++L F+ P TR+ Y+++D+ AR+Y+K M GL+V EDA+GN
Sbjct: 1 MQTNLERIKKHIEKLDTFTATPGQGTTRLTYSKEDLDARNYLKQEMAKVGLTVSEDAIGN 60
Query: 342 IFGRWEGQEPELAAVATGSHIDAIPYSGKYDGVVGVLGAIEAISV 476
I+GR EG+ P+L AV GSH D++P G +DG GV+ +E SV
Sbjct: 61 IYGRLEGESPDLPAVIVGSHFDSVPNGGAFDGPAGVITGLEVASV 105
>ref|NP_469884.1| similar to N-carbamyl-L-amino acid amidohydrolase [Listeria
innocua] gi|25290169|pir||AE1500 N-carbamyl-L-amino acid
amidohydrolase homolog lin0541 [imported] - Listeria
innocua (strain Clip11262) gi|16412981|emb|CAC95773.1|
similar to N-carbamyl-L-amino acid amidohydrolase
[Listeria innocua]
Length = 414
Score = 95.5 bits (236), Expect = 3e-19
Identities = 42/105 (40%), Positives = 67/105 (63%)
Frame = +3
Query: 162 LSVDAQGLQNQIDELSAFSDAPAPSVTRVLYTEKDVLARSYVKDLMGVAGLSVREDAVGN 341
+ + + ++ I+ L F+ P TR+ Y+++D+ AR+Y+K+ M GL+V EDA+GN
Sbjct: 1 MQTNLERIKKHIENLDRFTATPGQGTTRLTYSKEDLGARNYLKEEMAKVGLTVSEDAIGN 60
Query: 342 IFGRWEGQEPELAAVATGSHIDAIPYSGKYDGVVGVLGAIEAISV 476
I+GR EG P++ AV GSH D++P G +DG GV+ +E SV
Sbjct: 61 IYGRLEGDNPDIPAVIVGSHFDSVPNGGAFDGPAGVITGLEVASV 105
>ref|NP_241627.1| N-carbamyl-L-amino acid amidohydrolase [Bacillus halodurans]
gi|25290163|pir||A83745 N-carbamyl-L-amino acid
amidohydrolase BH0761 [imported] - Bacillus halodurans
(strain C-125) gi|10173375|dbj|BAB04480.1|
N-carbamyl-L-amino acid amidohydrolase [Bacillus
halodurans]
Length = 414
Score = 95.5 bits (236), Expect = 3e-19
Identities = 47/93 (50%), Positives = 66/93 (70%)
Frame = +3
Query: 192 QIDELSAFSDAPAPSVTRVLYTEKDVLARSYVKDLMGVAGLSVREDAVGNIFGRWEGQEP 371
++ E+ S VTR+ T+ ++ AR YV DLM +GLSV+ DAVGNI G+ EG +
Sbjct: 18 ELAEIGGTSPIDVHGVTRLSLTKTELRARQYVIDLMKDSGLSVQVDAVGNIIGKLEGTDL 77
Query: 372 ELAAVATGSHIDAIPYSGKYDGVVGVLGAIEAI 470
EL +V TGSHID++P+ G++DG +GVLGAIEA+
Sbjct: 78 ELPSVMTGSHIDSVPHGGRFDGTLGVLGAIEAV 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,727,842
Number of Sequences: 1393205
Number of extensions: 9654281
Number of successful extensions: 32101
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 30600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31962
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
