Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020253A_C01 KMC020253A_c01
(861 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD10753.1| ATP synthase, beta subunit [Paradisea liliastrum] 555 e-157
gb|AAK72747.1| ATP synthase beta subunit [Clivia nobilis] 555 e-157
emb|CAD10775.1| ATP synthase, beta subunit [Chlorogalum pomeridi... 555 e-157
gb|AAD50853.1| ATP synthase beta subunit [Eucharis grandiflora] 555 e-157
emb|CAB90032.1| ATP synthase beta subunit [Blandfordia punicea] 555 e-157
>emb|CAD10753.1| ATP synthase, beta subunit [Paradisea liliastrum]
Length = 448
Score = 555 bits (1429), Expect = e-157
Identities = 286/286 (100%), Positives = 286/286 (100%)
Frame = +2
Query: 2 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI 181
IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI
Sbjct: 123 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI 182
Query: 182 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA 361
AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA
Sbjct: 183 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA 242
Query: 362 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD 541
LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD
Sbjct: 243 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD 302
Query: 542 ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 721
ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI
Sbjct: 303 ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 362
Query: 722 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE 859
LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE
Sbjct: 363 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE 408
>gb|AAK72747.1| ATP synthase beta subunit [Clivia nobilis]
Length = 483
Score = 555 bits (1429), Expect = e-157
Identities = 286/286 (100%), Positives = 286/286 (100%)
Frame = +2
Query: 2 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI 181
IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI
Sbjct: 161 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI 220
Query: 182 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA 361
AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA
Sbjct: 221 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA 280
Query: 362 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD 541
LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD
Sbjct: 281 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD 340
Query: 542 ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 721
ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI
Sbjct: 341 ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 400
Query: 722 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE 859
LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE
Sbjct: 401 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE 446
>emb|CAD10775.1| ATP synthase, beta subunit [Chlorogalum pomeridianum]
Length = 494
Score = 555 bits (1429), Expect = e-157
Identities = 286/286 (100%), Positives = 286/286 (100%)
Frame = +2
Query: 2 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI 181
IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI
Sbjct: 168 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI 227
Query: 182 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA 361
AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA
Sbjct: 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA 287
Query: 362 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD 541
LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD
Sbjct: 288 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD 347
Query: 542 ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 721
ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI
Sbjct: 348 ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 407
Query: 722 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE 859
LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE
Sbjct: 408 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE 453
>gb|AAD50853.1| ATP synthase beta subunit [Eucharis grandiflora]
Length = 496
Score = 555 bits (1429), Expect = e-157
Identities = 286/286 (100%), Positives = 286/286 (100%)
Frame = +2
Query: 2 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI 181
IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI
Sbjct: 168 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI 227
Query: 182 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA 361
AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA
Sbjct: 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA 287
Query: 362 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD 541
LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD
Sbjct: 288 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD 347
Query: 542 ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 721
ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI
Sbjct: 348 ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 407
Query: 722 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE 859
LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE
Sbjct: 408 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE 453
>emb|CAB90032.1| ATP synthase beta subunit [Blandfordia punicea]
Length = 496
Score = 555 bits (1429), Expect = e-157
Identities = 286/286 (100%), Positives = 286/286 (100%)
Frame = +2
Query: 2 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI 181
IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI
Sbjct: 168 IGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNI 227
Query: 182 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA 361
AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA
Sbjct: 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSA 287
Query: 362 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD 541
LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD
Sbjct: 288 LLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLD 347
Query: 542 ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 721
ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI
Sbjct: 348 ATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 407
Query: 722 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE 859
LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE
Sbjct: 408 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAE 453
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 753,571,638
Number of Sequences: 1393205
Number of extensions: 17007236
Number of successful extensions: 51366
Number of sequences better than 10.0: 2809
Number of HSP's better than 10.0 without gapping: 47262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49777
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45709790868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
