Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020228A_C01 KMC020228A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL79181.1| beta-caryophyllene synthase QHS1 [Artemisia annua] 57 1e-07
emb|CAC12732.1| putative sesquiterpene cyclase [Artemisia annua] 57 1e-07
sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A (D-ca... 56 3e-07
emb|CAA77191.1| (+)-delta-cadinene synthase [Gossypium arboreum] 56 3e-07
emb|CAA04773.1| sesquiterpene cyclase [Fragaria vesca] 51 9e-06
>gb|AAL79181.1| beta-caryophyllene synthase QHS1 [Artemisia annua]
Length = 548
Score = 57.4 bits (137), Expect = 1e-07
Identities = 25/45 (55%), Positives = 37/45 (81%)
Frame = -3
Query: 560 VPKPLLMRVLNLSRVIDVLYKDSDGYTHSGESTKKIIEALLLNPI 426
+P PL+MRV+NL++V+DVLYK DG+T+ GE K I++LL++PI
Sbjct: 502 IPMPLMMRVINLAQVMDVLYKHKDGFTNVGEELKDHIKSLLVHPI 546
>emb|CAC12732.1| putative sesquiterpene cyclase [Artemisia annua]
Length = 549
Score = 57.4 bits (137), Expect = 1e-07
Identities = 25/45 (55%), Positives = 37/45 (81%)
Frame = -3
Query: 560 VPKPLLMRVLNLSRVIDVLYKDSDGYTHSGESTKKIIEALLLNPI 426
+P PL+MRV+NL++V+DVLYK DG+T+ GE K I++LL++PI
Sbjct: 503 IPMPLMMRVINLAQVMDVLYKHKDGFTNVGEELKDHIKSLLVHPI 547
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A (D-cadinene synthase)
gi|1002523|gb|AAB41259.1| (+)-delta-cadinene synthase
isozyme A gi|1217956|emb|CAA65289.1| (+)-delta-cadinene
synthase [Gossypium arboreum]
Length = 555
Score = 56.2 bits (134), Expect = 3e-07
Identities = 25/45 (55%), Positives = 36/45 (79%)
Frame = -3
Query: 560 VPKPLLMRVLNLSRVIDVLYKDSDGYTHSGESTKKIIEALLLNPI 426
+P P+L R LNL+RV+DVLY++ DGYTH G++ K I +LL++PI
Sbjct: 509 MPTPVLCRSLNLARVMDVLYREGDGYTHVGKAAKGGITSLLIDPI 553
>emb|CAA77191.1| (+)-delta-cadinene synthase [Gossypium arboreum]
Length = 555
Score = 56.2 bits (134), Expect = 3e-07
Identities = 25/45 (55%), Positives = 36/45 (79%)
Frame = -3
Query: 560 VPKPLLMRVLNLSRVIDVLYKDSDGYTHSGESTKKIIEALLLNPI 426
+P P+L R LNL+RV+DVLY++ DGYTH G++ K I +LL++PI
Sbjct: 509 MPTPVLCRSLNLARVMDVLYREGDGYTHVGKAAKGGITSLLIDPI 553
>emb|CAA04773.1| sesquiterpene cyclase [Fragaria vesca]
Length = 348
Score = 51.2 bits (121), Expect = 9e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = -3
Query: 557 PKPLLMRVLNLSRVIDVLYKDSDGYTHSGESTKKIIEALLLNPI 426
P P+L RVLNL+RV+D+LYK D +TH G+ K I A+ ++P+
Sbjct: 303 PVPVLNRVLNLTRVVDLLYKRGDAFTHVGKLMKDCIAAMFIDPV 346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,231,429
Number of Sequences: 1393205
Number of extensions: 6424617
Number of successful extensions: 9930
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 9829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9913
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
