Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020221A_C01 KMC020221A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG44776.1|AF271796_1 biotin carboxyl carrier protein subunit... 147 9e-35
gb|AAG44765.1|AF271071_1 biotin carboxyl carrier protein subunit... 147 9e-35
gb|AAO66472.1| biotin carboxylase carrier protein [Lycopersicon ... 90 2e-17
prf||2208465A Ac-CoA carboxylase 86 4e-16
gb|AAC49114.1| acetyl-CoA carboxylase biotin-containing subunit 86 4e-16
>gb|AAG44776.1|AF271796_1 biotin carboxyl carrier protein subunit [Glycine max]
Length = 284
Score = 147 bits (371), Expect = 9e-35
Identities = 95/161 (59%), Positives = 114/161 (70%), Gaps = 6/161 (3%)
Frame = +2
Query: 101 MASFSVPCSKSPAP--APLGLRSSHKVEFQNVLCLKPSQQSFGSLCARPASSEIGCLNRK 274
MASF++PC K A LGL S + + +N L LK S SFGSL + A + I CLN+K
Sbjct: 1 MASFTIPCPKCVVVPFAHLGLNS--QTQQRNALGLKKSL-SFGSLSSDSAPNGIQCLNKK 57
Query: 275 QLSVQKLQAQRNEAATVGNSNSAPLPVN---VASSKEKEDYNGSVSC-GTVADASSISTF 442
Q SV KLQAQ EA TV NSAP+ VN +A +EK+D+NG S T ADASSIS F
Sbjct: 58 QSSVWKLQAQPKEAVTV--ENSAPVQVNGPKIAPPEEKDDHNGKPSGPSTSADASSISAF 115
Query: 443 MAQVSDLVKLVDSRDIVELQLKQSDCELMIRKREALHPPPA 565
M QVSDLVKLVDS+DI+ELQLKQ++CEL+IRK+EAL PPPA
Sbjct: 116 MNQVSDLVKLVDSKDIMELQLKQANCELVIRKKEALLPPPA 156
>gb|AAG44765.1|AF271071_1 biotin carboxyl carrier protein subunit precursor [Glycine max]
Length = 284
Score = 147 bits (371), Expect = 9e-35
Identities = 95/161 (59%), Positives = 114/161 (70%), Gaps = 6/161 (3%)
Frame = +2
Query: 101 MASFSVPCSKSPAP--APLGLRSSHKVEFQNVLCLKPSQQSFGSLCARPASSEIGCLNRK 274
MASF++PC K A LGL S + + +N L LK S SFGSL + A + I CLN+K
Sbjct: 1 MASFTIPCPKCVVVPFAHLGLNS--QTQQRNALGLKKSL-SFGSLSSDSAPNGIQCLNKK 57
Query: 275 QLSVQKLQAQRNEAATVGNSNSAPLPVN---VASSKEKEDYNGSVSC-GTVADASSISTF 442
Q SV KLQAQ EA TV NSAP+ VN +A +EK+D+NG S T ADASSIS F
Sbjct: 58 QSSVWKLQAQPKEAVTV--ENSAPVQVNGPKIAPPEEKDDHNGKPSGPSTSADASSISAF 115
Query: 443 MAQVSDLVKLVDSRDIVELQLKQSDCELMIRKREALHPPPA 565
M QVSDLVKLVDS+DI+ELQLKQ++CEL+IRK+EAL PPPA
Sbjct: 116 MNQVSDLVKLVDSKDIMELQLKQANCELVIRKKEALLPPPA 156
>gb|AAO66472.1| biotin carboxylase carrier protein [Lycopersicon esculentum]
Length = 285
Score = 89.7 bits (221), Expect = 2e-17
Identities = 48/91 (52%), Positives = 61/91 (66%)
Frame = +2
Query: 296 QAQRNEAATVGNSNSAPLPVNVASSKEKEDYNGSVSCGTVADASSISTFMAQVSDLVKLV 475
+AQ NE A G+SN+A P+ + E+ S T +IS F++QVS LVKLV
Sbjct: 71 RAQSNEVALGGSSNNAATPI---TQSEEVKSPSETSSATSVSEEAISNFISQVSSLVKLV 127
Query: 476 DSRDIVELQLKQSDCELMIRKREALHPPPAP 568
DSRD+VELQLKQ DCE++IRK+EAL PPAP
Sbjct: 128 DSRDVVELQLKQFDCEILIRKKEALPQPPAP 158
>prf||2208465A Ac-CoA carboxylase
Length = 285
Score = 85.5 bits (210), Expect = 4e-16
Identities = 66/157 (42%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +2
Query: 104 ASFSVPCSKSPAPAPLGLRSSHKVEFQNVLCLKPSQQSFGSLCARPASSEIGCLNRKQLS 283
+SFSV + A ++S QN + + SF L A+P + +R
Sbjct: 4 SSFSVTSPAAAASVYAVTQTSSHFPIQN----RSRRVSF-RLSAKPKLRFLSKPSRSSYP 58
Query: 284 VQKLQAQRNEAATVGNSNSAPLP-VNVASSKEKEDYN-GSVSCGTVADASSISTFMAQVS 457
V K AQ N+ +T +SN+A + + A KEK S S +A SIS F+ QV+
Sbjct: 59 VVK--AQSNKVSTGASSNAAKVDGPSSAEGKEKNSLKESSASSPELATEESISEFLTQVT 116
Query: 458 DLVKLVDSRDIVELQLKQSDCELMIRKREALHPPPAP 568
LVKLVDSRDIVELQLKQ DCEL+IRK+EAL P AP
Sbjct: 117 TLVKLVDSRDIVELQLKQLDCELVIRKKEALPQPQAP 153
>gb|AAC49114.1| acetyl-CoA carboxylase biotin-containing subunit
Length = 285
Score = 85.5 bits (210), Expect = 4e-16
Identities = 66/157 (42%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +2
Query: 104 ASFSVPCSKSPAPAPLGLRSSHKVEFQNVLCLKPSQQSFGSLCARPASSEIGCLNRKQLS 283
+SFSV + A ++S QN + + SF L A+P + +R
Sbjct: 4 SSFSVTSPAAAASVYAVTQTSSHFPIQN----RSRRVSF-RLSAKPKLRFLSKPSRSSYP 58
Query: 284 VQKLQAQRNEAATVGNSNSAPLP-VNVASSKEKEDYN-GSVSCGTVADASSISTFMAQVS 457
V K AQ N+ +T +SN+A + + A KEK S S +A SIS F+ QV+
Sbjct: 59 VVK--AQSNKVSTGASSNAAKVDGPSSAEGKEKNSLKESSASSPELATEESISEFLTQVT 116
Query: 458 DLVKLVDSRDIVELQLKQSDCELMIRKREALHPPPAP 568
LVKLVDSRDIVELQLKQ DCEL+IRK+EAL P AP
Sbjct: 117 TLVKLVDSRDIVELQLKQLDCELVIRKKEALPQPQAP 153
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,192,615
Number of Sequences: 1393205
Number of extensions: 10782194
Number of successful extensions: 28957
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 28082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28937
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
