>KMC020210A_C01 KMC020210A_c01
TTTTTTTAACAGTAAAGGCCGCATTTTTATTGAAATTTCAAGATTAGCAAGTACTACCAC
GTTACATAGAAAACACACACTACCTTCTTCATGAAACACGAGGAAGTATAACTTATTCCA
CTAGAAAAACATAAAACTGAAAGTCCCACACAACTTGAAACCACACTCTTTCATAAAATC
AATGATCAAAGCACAACATCTAGTGCGGTGCGTGCTTGCTGTGGCAGCACTTGTAGCTAA
TGAAAATCTCCATGGAATTAGGACACTCGGGGCACCGTATAACCTCCGGCAACTTACCCG
CCACATTAGGAATCTCAAGGTGAGAGCACCGGTGAGTAGCTTTCACAATCTTGTCATGAT
ACTCTTTAAACGAGAATTCAAACCCTTTCTTCCCCACAACGTCCTTCCACTTCTCAAACT
CCGCTACAGCCTTCAATATCGTCGTTCCGTGGCCGGTCACGACCACGGATGACCCCTTGC
TGAGAAGGGCCCACCCGGTTTCTTTCTTATAGGAGAGCATTTTT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC020210A_C01 KMC020210A_c01
         (524 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_186817.1| unknown protein; protein id: At3g01680.1 [Arabi...    77  2e-13
ref|NP_566145.1| expressed protein; protein id: At3g01670.1, sup...    69  4e-11
gb|AAF01550.1|AC009325_20 unknown protein [Arabidopsis thaliana]       69  4e-11
emb|CAC29002.1| coat protein [Indian cardamom mosaic virus]            35  0.54
gb|AAF01060.1|AF189125_1 polyprotein [cardamom mosaic virus]           35  0.54

>ref|NP_186817.1| unknown protein; protein id: At3g01680.1 [Arabidopsis thaliana]
           gi|6016725|gb|AAF01551.1|AC009325_21 unknown protein
           [Arabidopsis thaliana]
          Length = 740

 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 40/108 (37%), Positives = 66/108 (61%), Gaps = 5/108 (4%)
 Frame = -2

Query: 523 KMLSYKKETGWALLSKGSSVVVTGHGTTILKAVAEFEK-WKDVVGKKGFEFSFKEYH-DK 350
           K+LSY K  GWALLSKG  +V+  HG  I + ++ +++ WK  V  KG+  +  ++H D+
Sbjct: 624 KILSYDKLGGWALLSKGPEIVMIAHGA-IERTMSVYDRTWKTHVPTKGYTKAMSDHHHDE 682

Query: 349 IVKATHR-CSHLEIPNVA--GKLPEVIRCPECPNSMEIFISYKCCHSK 215
           +++ T + C H +    A  G++PE + C EC   ME ++S+ CCH +
Sbjct: 683 VLRETGKPCGHFDFHITARSGRIPEKMNCFECQRPMEKYMSFSCCHDE 730

>ref|NP_566145.1| expressed protein; protein id: At3g01670.1, supported by cDNA:
            gi_16648950 [Arabidopsis thaliana]
            gi|16648951|gb|AAL24327.1| Unknown protein [Arabidopsis
            thaliana]
          Length = 822

 Score = 68.6 bits (166), Expect = 4e-11
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
 Frame = -2

Query: 520  MLSYKKE-TGWALLSKGSSVVVTGHGTTILKAVAEFEKWKDVVGKKGFEFSFKEYHDKIV 344
            ML Y  E  GW L+SK S ++V   G    + +AEF +W+  +  KGF  +  + H  + 
Sbjct: 722  MLGYGGEGDGWGLVSKASDMMVRAKGNLFSRGLAEFNEWEVNIPTKGFLTALND-HLLMR 780

Query: 343  KATHRCSHLEIPNVAGKLPEVIRCPECPNSMEIFISYKCC 224
               H C+   +P  AG +P  + C EC  +ME +  Y+CC
Sbjct: 781  LPPHHCTRFMLPETAGIIPNEVECTECRRTMEKYYLYQCC 820

>gb|AAF01550.1|AC009325_20 unknown protein [Arabidopsis thaliana]
          Length = 846

 Score = 68.6 bits (166), Expect = 4e-11
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
 Frame = -2

Query: 520  MLSYKKE-TGWALLSKGSSVVVTGHGTTILKAVAEFEKWKDVVGKKGFEFSFKEYHDKIV 344
            ML Y  E  GW L+SK S ++V   G    + +AEF +W+  +  KGF  +  + H  + 
Sbjct: 746  MLGYGGEGDGWGLVSKASDMMVRAKGNLFSRGLAEFNEWEVNIPTKGFLTALND-HLLMR 804

Query: 343  KATHRCSHLEIPNVAGKLPEVIRCPECPNSMEIFISYKCC 224
               H C+   +P  AG +P  + C EC  +ME +  Y+CC
Sbjct: 805  LPPHHCTRFMLPETAGIIPNEVECTECRRTMEKYYLYQCC 844

>emb|CAC29002.1| coat protein [Indian cardamom mosaic virus]
          Length = 271

 Score = 35.0 bits (79), Expect = 0.54
 Identities = 22/67 (32%), Positives = 30/67 (43%)
 Frame = -3

Query: 465 WS*PATERRY*RL*RSLRSGRTLWGRKGLNSRLKSIMTRL*KLLTGALTLRFLMWRVSCR 286
           W  P T RR          G+ +W RK +NS  K   T+  +L T   TL+F  W    R
Sbjct: 42  WRIPPTPRRLSHFNNPRVKGKRIWNRKIINSIAKEQFTQSSQLAT---TLQFERWAEDVR 98

Query: 285 RLYGAPS 265
           +  G P+
Sbjct: 99  KSLGTPN 105

>gb|AAF01060.1|AF189125_1 polyprotein [cardamom mosaic virus]
          Length = 528

 Score = 35.0 bits (79), Expect = 0.54
 Identities = 22/67 (32%), Positives = 30/67 (43%)
 Frame = -3

Query: 465 WS*PATERRY*RL*RSLRSGRTLWGRKGLNSRLKSIMTRL*KLLTGALTLRFLMWRVSCR 286
           W  P T RR          G+ +W RK +NS  K   T+  +L T   TL+F  W    R
Sbjct: 299 WRIPPTPRRLSHFNNPRVKGKRIWNRKIINSIAKEQFTQSSQLAT---TLQFEKWAEDVR 355

Query: 285 RLYGAPS 265
           +  G P+
Sbjct: 356 KSLGTPN 362

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,773,907
Number of Sequences: 1393205
Number of extensions: 9168545
Number of successful extensions: 24935
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24916
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MFB079b12_f BP039759 1 349 2 MF021g07_f BP029390 8 524

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