Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020154A_C01 KMC020154A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188478.1| putative chloroplast nucleoid DNA-binding prote... 146 2e-34
gb|AAL87345.1| putative chloroplast nucleoid DNA-binding protein... 146 2e-34
ref|NP_173922.1| hypothetical protein; protein id: At1g25510.1, ... 142 3e-33
dbj|BAB21205.1| nucleoid DNA-binding protein cnd41-like protein ... 115 4e-25
gb|AAM66061.1| chloroplast nucleoid DNA binding protein, putativ... 77 2e-13
>ref|NP_188478.1| putative chloroplast nucleoid DNA-binding protein; protein id:
At3g18490.1 [Arabidopsis thaliana]
gi|11994113|dbj|BAB01116.1| CND41, chloroplast nucleoid
DNA binding protein-like [Arabidopsis thaliana]
gi|23297732|gb|AAN13013.1| putative chloroplast nucleoid
DNA-binding protein [Arabidopsis thaliana]
Length = 500
Score = 146 bits (369), Expect = 2e-34
Identities = 86/183 (46%), Positives = 115/183 (61%), Gaps = 6/183 (3%)
Frame = +1
Query: 61 TLFITITLSLAPPTTSTRATPIHGSSESSTAVLDVSSSLHQAHQVLSYS-TQLVESSLKE 237
+L +TLSL TT + + S+ T VLDV SSL Q +LS T+ ++ K
Sbjct: 8 SLLAVVTLSLFLTTTDASSRSL--STPPKTNVLDVVSSLQQTQTILSLDPTRSSLTTTKP 65
Query: 238 ETHHKPT---SSSSFSVQLHPRGTVLNEKHRDYKNLVLSRLARDSARVNSLTLKLKLALN 408
E+ P SSS S++LH R T + +H+DYK+L LSRL RDS+RV + K++ A+
Sbjct: 66 ESLSDPVFFNSSSPLSLELHSRDTFVASQHKDYKSLTLSRLERDSSRVAGIVAKIRFAVE 125
Query: 409 GVNKSDLHPTQMD--QLLPEALSTPVSSGTGQGSGEYFSRVGVGQPAKPFYMVLDTGSDV 582
GV++SDL P + + E L+TPV SG QGSGEYFSR+GVG PAK Y+VLDTGSDV
Sbjct: 126 GVDRSDLKPVYNEDTRYQTEDLTTPVVSGASQGSGEYFSRIGVGTPAKEMYLVLDTGSDV 185
Query: 583 NWL 591
NW+
Sbjct: 186 NWI 188
>gb|AAL87345.1| putative chloroplast nucleoid DNA-binding protein [Arabidopsis
thaliana]
Length = 500
Score = 146 bits (369), Expect = 2e-34
Identities = 86/183 (46%), Positives = 115/183 (61%), Gaps = 6/183 (3%)
Frame = +1
Query: 61 TLFITITLSLAPPTTSTRATPIHGSSESSTAVLDVSSSLHQAHQVLSYS-TQLVESSLKE 237
+L +TLSL TT + + S+ T VLDV SSL Q +LS T+ ++ K
Sbjct: 8 SLLAVVTLSLFLTTTDASSRSL--STPPKTNVLDVVSSLQQTQTILSLDPTRSSLTTTKP 65
Query: 238 ETHHKPT---SSSSFSVQLHPRGTVLNEKHRDYKNLVLSRLARDSARVNSLTLKLKLALN 408
E+ P SSS S++LH R T + +H+DYK+L LSRL RDS+RV + K++ A+
Sbjct: 66 ESLSDPVFFNSSSPLSLELHSRDTFVASQHKDYKSLTLSRLERDSSRVAGIVAKIRFAVE 125
Query: 409 GVNKSDLHPTQMD--QLLPEALSTPVSSGTGQGSGEYFSRVGVGQPAKPFYMVLDTGSDV 582
GV++SDL P + + E L+TPV SG QGSGEYFSR+GVG PAK Y+VLDTGSDV
Sbjct: 126 GVDRSDLKPVYNEDTRYQTEDLTTPVVSGASQGSGEYFSRIGVGTPAKDMYLVLDTGSDV 185
Query: 583 NWL 591
NW+
Sbjct: 186 NWI 188
>ref|NP_173922.1| hypothetical protein; protein id: At1g25510.1, supported by cDNA:
gi_20466515 [Arabidopsis thaliana]
gi|25518510|pir||D86385 hypothetical protein F2J7.6 -
Arabidopsis thaliana
gi|12321511|gb|AAG50814.1|AC079281_16 hypothetical
protein [Arabidopsis thaliana]
gi|20466516|gb|AAM20575.1| unknown protein [Arabidopsis
thaliana] gi|23198172|gb|AAN15613.1| unknown protein
[Arabidopsis thaliana]
Length = 483
Score = 142 bits (358), Expect = 3e-33
Identities = 84/191 (43%), Positives = 120/191 (61%), Gaps = 2/191 (1%)
Frame = +1
Query: 25 MAPNQPFLVLTFTLFI-TITLSLAPPTTSTRATPIHGSSESSTAVLDVSSSLHQAHQVLS 201
M+PN F F L + S P TST ++T++L+V+ S+H+
Sbjct: 1 MSPNYSFFFFIFFLTSHSSVFSRILPETST----------TTTSILNVADSIHRT----K 46
Query: 202 YSTQLVESSLKEETHHKPTSSSSFSVQLHPRGTVLNEKHRDYKNLVLSRLARDSARVNSL 381
Y++ + +E+TH ++SSSFS+QLH R +V +H DYK+L L+RL RD+ARV SL
Sbjct: 47 YTSSFRLNQQEEQTH---SASSSFSLQLHSRVSVRGTEHSDYKSLTLARLNRDTARVKSL 103
Query: 382 TLKLKLALNGVNKSDLHP-TQMDQLLPEALSTPVSSGTGQGSGEYFSRVGVGQPAKPFYM 558
+L LA+N ++K+DL P + M + + P+ SGT QGSGEYF+RVG+G+PA+ YM
Sbjct: 104 ITRLDLAINNISKADLKPISTMYTTEEQDIEAPLISGTTQGSGEYFTRVGIGKPAREVYM 163
Query: 559 VLDTGSDVNWL 591
VLDTGSDVNWL
Sbjct: 164 VLDTGSDVNWL 174
>dbj|BAB21205.1| nucleoid DNA-binding protein cnd41-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 504
Score = 115 bits (288), Expect = 4e-25
Identities = 73/196 (37%), Positives = 108/196 (54%), Gaps = 11/196 (5%)
Frame = +1
Query: 37 QPFLVLTFTLFITITLSLAP-PTTSTRATPIHGSSESSTAVLDVSSSLHQAHQVLSYST- 210
QP ++L L + + + +P P S R H S +T LDV++SL +A +S
Sbjct: 2 QPPILLPLLLLLLLLAAASPRPVLSRR----HASPPLATETLDVAASLSRARAAVSAEAV 57
Query: 211 ---QLVESSLKEETHHKPTSSSSFSVQLHPRGTVLNE----KHRDYKNLVLSRLARDSAR 369
Q +++ E + +++LH R + E +H Y++LVL+RL RDSAR
Sbjct: 58 PLHQSAAAAVSTEVVGEEHEEGRLALRLHSRDFLPEEQGRQRHASYRSLVLARLRRDSAR 117
Query: 370 VNSLTLKLKLALNGVNKSDLHPTQMDQLLPEA--LSTPVSSGTGQGSGEYFSRVGVGQPA 543
+++ + +A +GV++ DL P + A + PV SG G GSGEYFSRVGVG PA
Sbjct: 118 AAAVSARAAMAADGVSRFDLVPANVTAFEASAAEIQGPVVSGVGLGSGEYFSRVGVGSPA 177
Query: 544 KPFYMVLDTGSDVNWL 591
+ YMVLDTGSDV W+
Sbjct: 178 RQLYMVLDTGSDVTWV 193
>gb|AAM66061.1| chloroplast nucleoid DNA binding protein, putative [Arabidopsis
thaliana]
Length = 485
Score = 77.0 bits (188), Expect = 2e-13
Identities = 59/157 (37%), Positives = 75/157 (47%)
Frame = +1
Query: 121 PIHGSSESSTAVLDVSSSLHQAHQVLSYSTQLVESSLKEETHHKPTSSSSFSVQLHPRGT 300
P S S + S SL A V ES L+ E S SS S+ L+
Sbjct: 20 PSFSSLPSFQTLFPNSHSLPCASPVSFQPDSDSESLLESEFESGSDSESSSSITLNLDHI 79
Query: 301 VLNEKHRDYKNLVLSRLARDSARVNSLTLKLKLALNGVNKSDLHPTQMDQLLPEALSTPV 480
++ + L SRL RDS RV S+ LA ++ H + P S+ V
Sbjct: 80 DALSSNKTPQELFSSRLQRDSRRVRSIAT---LAAQIPGRNVTHAPR-----PGGFSSSV 131
Query: 481 SSGTGQGSGEYFSRVGVGQPAKPFYMVLDTGSDVNWL 591
SG QGSGEYF+R+GVG PA+ YMVLDTGSD+ WL
Sbjct: 132 VSGLSQGSGEYFTRLGVGTPARYVYMVLDTGSDIVWL 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.312 0.126 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 620,029,164
Number of Sequences: 1393205
Number of extensions: 17974529
Number of successful extensions: 209170
Number of sequences better than 10.0: 3770
Number of HSP's better than 10.0 without gapping: 87690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152119
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
