Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020115A_C01 KMC020115A_c01
(870 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK84479.1| putative auxin growth promotor protein [Lycopersi... 415 e-115
ref|NP_201350.2| putative protein; protein id: At5g65470.1, supp... 394 e-109
gb|AAM13166.1| unknown protein [Arabidopsis thaliana] gi|2213628... 394 e-109
dbj|BAB11569.1| contains similarity to auxin-independent growth ... 394 e-109
pir||T06805 RT17-1 protein homolog - garden pea gi|1778376|gb|AA... 380 e-104
>gb|AAK84479.1| putative auxin growth promotor protein [Lycopersicon esculentum]
Length = 478
Score = 415 bits (1066), Expect = e-115
Identities = 198/251 (78%), Positives = 221/251 (87%)
Frame = -2
Query: 869 LRSPQGSAGEIGSNYLQEVTDGGDSKNAGKFVVLHLRFDKDMAAHSACDFGGGKAEKFAL 690
LR P + +NYL+EVTD + GKF VLHLRFDKDMAAHSACDFGGGKAE AL
Sbjct: 228 LRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLAL 287
Query: 689 AKYRQVIWQGRLLNSQFTDEELRSQGRCPMTPEEVGLLLAALGFDNSTRLYLASHKVYGG 510
AKYRQVIW GR++NSQFTDEELRSQGRCP+TPEEVGLLLAALGFDN+TRLYLASHKVYGG
Sbjct: 288 AKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGG 347
Query: 509 EARISTLRQLFPLMEDQKSLASSYERFQIKGKASLLAALDYYVGLHSDIFISASPGNMHN 330
E R+S LR LFPLMED+KSLASS ER IKGKASLLAA+DYYVG+HSDIF+SASPGNMHN
Sbjct: 348 ERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHN 407
Query: 329 AVVGHRTYLNLKTIRPNLVLMGQLFLNKTMEWSEFEHAVVEGHQNRQGQLRLRKPKQSIY 150
A+VG RTY N+KTIRPN+ L+GQLFLNKT+ W EF+ +V+EGHQNRQGQ+RLRKPKQS+Y
Sbjct: 408 AMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLY 467
Query: 149 TYPAPDCMCQA 117
TYPAPDCMCQA
Sbjct: 468 TYPAPDCMCQA 478
>ref|NP_201350.2| putative protein; protein id: At5g65470.1, supported by cDNA:
gi_20260535 [Arabidopsis thaliana]
Length = 504
Score = 394 bits (1013), Expect = e-109
Identities = 192/251 (76%), Positives = 221/251 (87%), Gaps = 2/251 (0%)
Frame = -2
Query: 869 LRSPQGSAGEIGSN--YLQEVTDGGDSKNAGKFVVLHLRFDKDMAAHSACDFGGGKAEKF 696
LR+P + + N +L ++T+ + GKF VLHLRFDKDMAAHSACDFGGGKAEK
Sbjct: 252 LRNPSWRSNKEQKNVDHLGDMTNPHRRQEPGKFAVLHLRFDKDMAAHSACDFGGGKAEKL 311
Query: 695 ALAKYRQVIWQGRLLNSQFTDEELRSQGRCPMTPEEVGLLLAALGFDNSTRLYLASHKVY 516
+LAKYRQ+IWQGR+LNSQFTDEELRSQGRCP+TPEE+GLLLAA GFDN+TRLYLASHKVY
Sbjct: 312 SLAKYRQMIWQGRVLNSQFTDEELRSQGRCPLTPEEMGLLLAAFGFDNNTRLYLASHKVY 371
Query: 515 GGEARISTLRQLFPLMEDQKSLASSYERFQIKGKASLLAALDYYVGLHSDIFISASPGNM 336
GGEARISTLRQ+FP MED++SLASS ER +IKGKASLLAALDYYV +HSDIFISASPGNM
Sbjct: 372 GGEARISTLRQVFPRMEDKRSLASSEERARIKGKASLLAALDYYVSMHSDIFISASPGNM 431
Query: 335 HNAVVGHRTYLNLKTIRPNLVLMGQLFLNKTMEWSEFEHAVVEGHQNRQGQLRLRKPKQS 156
HNA+VGHRT+ NLKTIRPN+ L+GQLFLNK++ W +F+ A+ EGH NRQGQ+RLRKPKQS
Sbjct: 432 HNALVGHRTFENLKTIRPNMALIGQLFLNKSITWVDFQQALGEGHVNRQGQIRLRKPKQS 491
Query: 155 IYTYPAPDCMC 123
IYTYPAPDCMC
Sbjct: 492 IYTYPAPDCMC 502
>gb|AAM13166.1| unknown protein [Arabidopsis thaliana] gi|22136282|gb|AAM91219.1|
unknown protein [Arabidopsis thaliana]
Length = 504
Score = 394 bits (1013), Expect = e-109
Identities = 192/251 (76%), Positives = 221/251 (87%), Gaps = 2/251 (0%)
Frame = -2
Query: 869 LRSPQGSAGEIGSN--YLQEVTDGGDSKNAGKFVVLHLRFDKDMAAHSACDFGGGKAEKF 696
LR+P + + N +L ++T+ + GKF VLHLRFDKDMAAHSACDFGGGKAEK
Sbjct: 252 LRNPSWRSNKEQKNVDHLGDMTNPHRRQEPGKFAVLHLRFDKDMAAHSACDFGGGKAEKL 311
Query: 695 ALAKYRQVIWQGRLLNSQFTDEELRSQGRCPMTPEEVGLLLAALGFDNSTRLYLASHKVY 516
+LAKYRQ+IWQGR+LNSQFTDEELRSQGRCP+TPEE+GLLLAA GFDN+TRLYLASHKVY
Sbjct: 312 SLAKYRQMIWQGRVLNSQFTDEELRSQGRCPLTPEEMGLLLAAFGFDNNTRLYLASHKVY 371
Query: 515 GGEARISTLRQLFPLMEDQKSLASSYERFQIKGKASLLAALDYYVGLHSDIFISASPGNM 336
GGEARISTLRQ+FP MED++SLASS ER +IKGKASLLAALDYYV +HSDIFISASPGNM
Sbjct: 372 GGEARISTLRQVFPKMEDKRSLASSEERARIKGKASLLAALDYYVSMHSDIFISASPGNM 431
Query: 335 HNAVVGHRTYLNLKTIRPNLVLMGQLFLNKTMEWSEFEHAVVEGHQNRQGQLRLRKPKQS 156
HNA+VGHRT+ NLKTIRPN+ L+GQLFLNK++ W +F+ A+ EGH NRQGQ+RLRKPKQS
Sbjct: 432 HNALVGHRTFENLKTIRPNMALIGQLFLNKSITWVDFQQALGEGHVNRQGQIRLRKPKQS 491
Query: 155 IYTYPAPDCMC 123
IYTYPAPDCMC
Sbjct: 492 IYTYPAPDCMC 502
>dbj|BAB11569.1| contains similarity to auxin-independent growth
promoter~gene_id:MNA5.21 [Arabidopsis thaliana]
Length = 523
Score = 394 bits (1013), Expect = e-109
Identities = 192/251 (76%), Positives = 221/251 (87%), Gaps = 2/251 (0%)
Frame = -2
Query: 869 LRSPQGSAGEIGSN--YLQEVTDGGDSKNAGKFVVLHLRFDKDMAAHSACDFGGGKAEKF 696
LR+P + + N +L ++T+ + GKF VLHLRFDKDMAAHSACDFGGGKAEK
Sbjct: 271 LRNPSWRSNKEQKNVDHLGDMTNPHRRQEPGKFAVLHLRFDKDMAAHSACDFGGGKAEKL 330
Query: 695 ALAKYRQVIWQGRLLNSQFTDEELRSQGRCPMTPEEVGLLLAALGFDNSTRLYLASHKVY 516
+LAKYRQ+IWQGR+LNSQFTDEELRSQGRCP+TPEE+GLLLAA GFDN+TRLYLASHKVY
Sbjct: 331 SLAKYRQMIWQGRVLNSQFTDEELRSQGRCPLTPEEMGLLLAAFGFDNNTRLYLASHKVY 390
Query: 515 GGEARISTLRQLFPLMEDQKSLASSYERFQIKGKASLLAALDYYVGLHSDIFISASPGNM 336
GGEARISTLRQ+FP MED++SLASS ER +IKGKASLLAALDYYV +HSDIFISASPGNM
Sbjct: 391 GGEARISTLRQVFPRMEDKRSLASSEERARIKGKASLLAALDYYVSMHSDIFISASPGNM 450
Query: 335 HNAVVGHRTYLNLKTIRPNLVLMGQLFLNKTMEWSEFEHAVVEGHQNRQGQLRLRKPKQS 156
HNA+VGHRT+ NLKTIRPN+ L+GQLFLNK++ W +F+ A+ EGH NRQGQ+RLRKPKQS
Sbjct: 451 HNALVGHRTFENLKTIRPNMALIGQLFLNKSITWVDFQQALGEGHVNRQGQIRLRKPKQS 510
Query: 155 IYTYPAPDCMC 123
IYTYPAPDCMC
Sbjct: 511 IYTYPAPDCMC 521
>pir||T06805 RT17-1 protein homolog - garden pea gi|1778376|gb|AAB72114.1|
PsRT17-1 [Pisum sativum]
Length = 406
Score = 380 bits (976), Expect = e-104
Identities = 187/210 (89%), Positives = 198/210 (94%)
Frame = -2
Query: 869 LRSPQGSAGEIGSNYLQEVTDGGDSKNAGKFVVLHLRFDKDMAAHSACDFGGGKAEKFAL 690
LR+PQ S E+GSNYLQEVTD DSKNAGKFVVLHLRFDKDMAAHSACDFGGGKAEK AL
Sbjct: 192 LRNPQHSTDEMGSNYLQEVTDADDSKNAGKFVVLHLRFDKDMAAHSACDFGGGKAEKLAL 251
Query: 689 AKYRQVIWQGRLLNSQFTDEELRSQGRCPMTPEEVGLLLAALGFDNSTRLYLASHKVYGG 510
AKYRQVIWQGR+LNSQFTDEELRSQGRCPMTPEEVGLLLAALGFDNSTRLYLASHKVYGG
Sbjct: 252 AKYRQVIWQGRVLNSQFTDEELRSQGRCPMTPEEVGLLLAALGFDNSTRLYLASHKVYGG 311
Query: 509 EARISTLRQLFPLMEDQKSLASSYERFQIKGKASLLAALDYYVGLHSDIFISASPGNMHN 330
ARI+TL+QLFPLMED+KSL S +ER QIKGKASLLAALDYY+ +HSDIFISASPGNMHN
Sbjct: 312 GARIATLKQLFPLMEDKKSLTSPFERAQIKGKASLLAALDYYISIHSDIFISASPGNMHN 371
Query: 329 AVVGHRTYLNLKTIRPNLVLMGQLFLNKTM 240
A+VGHRTYLNLKTIRPN+ LMGQLFLNKTM
Sbjct: 372 ALVGHRTYLNLKTIRPNMALMGQLFLNKTM 401
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 731,704,356
Number of Sequences: 1393205
Number of extensions: 15768216
Number of successful extensions: 45464
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 44158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45320
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46545945579
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
