Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020108A_C01 KMC020108A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum] g... 44 0.001
gb|EAA11523.1| agCP6591 [Anopheles gambiae str. PEST] 42 0.005
dbj|BAA92559.1| KIAA1321 protein [Homo sapiens] 40 0.014
ref|XP_030856.1| similar to KIAA1321 protein [Homo sapiens] 40 0.014
gb|AAH04940.1|AAH04940 Similar to RIKEN cDNA 2210403L10 gene [Ho... 40 0.019
>gb|AAM44363.1| hypothetical protein [Dictyostelium discoideum]
gi|28828387|gb|AAM09303.2| similar to Plasmodium
lophurae. Histidine-rich glycoprotein precursor
[Dictyostelium discoideum]
Length = 233
Score = 44.3 bits (103), Expect = 0.001
Identities = 15/26 (57%), Positives = 16/26 (60%)
Frame = +1
Query: 94 HHHHEHEHHHHHLKISPSPHPLSYIH 171
HHHH H HHHHH P PHP + H
Sbjct: 143 HHHHHHHHHHHHPHHHPHPHPHPHPH 168
Score = 42.4 bits (98), Expect = 0.004
Identities = 14/26 (53%), Positives = 16/26 (60%)
Frame = +1
Query: 94 HHHHEHEHHHHHLKISPSPHPLSYIH 171
HHHH H H HHH P PHP ++H
Sbjct: 147 HHHHHHHHPHHHPHPHPHPHPHPHLH 172
Score = 40.8 bits (94), Expect = 0.011
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = +1
Query: 94 HHHHEHEHHHHHLKISPSPHPLSYIH 171
HHHH H HHHHH PHP + H
Sbjct: 141 HHHHHHHHHHHHHHPHHHPHPHPHPH 166
Score = 40.8 bits (94), Expect = 0.011
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = +1
Query: 94 HHHHEHEHHHHHLKISPSPHPLSYIH 171
HHHH H HHHHH P HP + H
Sbjct: 139 HHHHHHHHHHHHHHHHPHHHPHPHPH 164
Score = 40.8 bits (94), Expect = 0.011
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = +1
Query: 94 HHHHEHEHHHHHLKISPSPHPLSYIH 171
HHHH H HHHHH P HP + H
Sbjct: 84 HHHHHHHHHHHHHPHHPHHHPHHHHH 109
Score = 40.0 bits (92), Expect = 0.019
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 34 PYHDKQHPRNAVKKAQLS*KHHHHEHEHHHHHLKISPSPHPLSYIHY 174
P ++ HP + HHHH H HHHHH HP + H+
Sbjct: 60 PNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHH 106
Score = 38.1 bits (87), Expect = 0.072
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 94 HHHHEHEHHHHHLKISPSPHPLSYIHY 174
HHHH H HHHHH PH + H+
Sbjct: 82 HHHHHHHHHHHHHHHPHHPHHHPHHHH 108
Score = 37.4 bits (85), Expect = 0.12
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 94 HHHHEHEHHHHHLKISPSPHPLSYIH 171
HHHH H HHHHH HP + H
Sbjct: 135 HHHHHHHHHHHHHHHHHHHHPHHHPH 160
Score = 37.0 bits (84), Expect = 0.16
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 34 PYHDKQHPRNAVKKAQLS*KHHHHEHEHHHHH 129
P+H H + HHHH H HHHHH
Sbjct: 110 PHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH 141
Score = 35.8 bits (81), Expect = 0.35
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 34 PYHDKQHPRNAVKKAQLS*KHHHHEH-EHHHHH 129
P+H HP + HHHH H HHHHH
Sbjct: 97 PHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHH 129
Score = 35.0 bits (79), Expect = 0.61
Identities = 15/45 (33%), Positives = 19/45 (41%)
Frame = +1
Query: 37 YHDKQHPRNAVKKAQLS*KHHHHEHEHHHHHLKISPSPHPLSYIH 171
+H HP HH H H H H H + P+PHP + H
Sbjct: 149 HHHHHHPH-----------HHPHPHPHPHPHPHLHPNPHPHPHPH 182
Score = 34.7 bits (78), Expect = 0.79
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 97 HHHEHEHHHHHLKISPSPHPLSYIHY 174
H H H H HHH +P PHP + H+
Sbjct: 182 HPHPHPHPHHHPNPNPHPHPHPHPHH 207
Score = 34.3 bits (77), Expect = 1.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 94 HHHHEHEHHHHHLKISPSPHPLSYIHY 174
HHHH H HHHH PH + H+
Sbjct: 86 HHHHHHHHHHHPHHPHHHPHHHHHPHH 112
Score = 33.9 bits (76), Expect = 1.3
Identities = 14/29 (48%), Positives = 16/29 (54%), Gaps = 3/29 (10%)
Frame = +1
Query: 94 HHH---HEHEHHHHHLKISPSPHPLSYIH 171
HHH H H H H HL +P PHP + H
Sbjct: 156 HHHPHPHPHPHPHPHLHPNPHPHPHPHPH 184
Score = 33.5 bits (75), Expect = 1.8
Identities = 16/51 (31%), Positives = 18/51 (34%), Gaps = 21/51 (41%)
Frame = +1
Query: 94 HHHHEHEHHHH---------------------HLKISPSPHPLSYIHYLKN 183
HHHH H HHHH H P PHP + H+ N
Sbjct: 144 HHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPN 194
Score = 31.2 bits (69), Expect = 8.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 97 HHHEHEHHHHHLKISPSPHPLSYIHY 174
H H H HHH + P PHP + H+
Sbjct: 184 HPHPHPHHHPNPNPHPHPHPHPHHHH 209
>gb|EAA11523.1| agCP6591 [Anopheles gambiae str. PEST]
Length = 307
Score = 42.0 bits (97), Expect = 0.005
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 40 HDKQHPRNAVKKAQLS*KHHH-HEHEHHHHHLKISPSPHPLS 162
H HP QL HHH H H HHHHH P HPLS
Sbjct: 3 HHPHHPHQ-----QLPPHHHHPHHHPHHHHHHHHQPGTHPLS 39
>dbj|BAA92559.1| KIAA1321 protein [Homo sapiens]
Length = 714
Score = 40.4 bits (93), Expect = 0.014
Identities = 21/64 (32%), Positives = 28/64 (42%), Gaps = 4/64 (6%)
Frame = +1
Query: 37 YHDKQHPRNAVKKAQLS*KHHHHE----HEHHHHHLKISPSPHPLSYIHYLKNWVNQRPK 204
+H HP + ++ Q HHHH H H+HHH PH YL++ PK
Sbjct: 32 HHSHHHPHHHPQQQQQQPHHHHHYYFYNHSHNHHHHHHHQQPH-----QYLQHGAEGSPK 86
Query: 205 *PPK 216
PK
Sbjct: 87 AQPK 90
>ref|XP_030856.1| similar to KIAA1321 protein [Homo sapiens]
Length = 695
Score = 40.4 bits (93), Expect = 0.014
Identities = 21/64 (32%), Positives = 28/64 (42%), Gaps = 4/64 (6%)
Frame = +1
Query: 37 YHDKQHPRNAVKKAQLS*KHHHHE----HEHHHHHLKISPSPHPLSYIHYLKNWVNQRPK 204
+H HP + ++ Q HHHH H H+HHH PH YL++ PK
Sbjct: 13 HHSHHHPHHHPQQQQQQPHHHHHYYFYNHSHNHHHHHHHQQPH-----QYLQHGAEGSPK 67
Query: 205 *PPK 216
PK
Sbjct: 68 AQPK 71
>gb|AAH04940.1|AAH04940 Similar to RIKEN cDNA 2210403L10 gene [Homo sapiens]
Length = 325
Score = 40.0 bits (92), Expect = 0.019
Identities = 16/28 (57%), Positives = 16/28 (57%)
Frame = +1
Query: 64 AVKKAQLS*KHHHHEHEHHHHHLKISPS 147
AV Q HHHHEH HHHHH PS
Sbjct: 298 AVPVIQRHEHHHHHEHHHHHHHHHFHPS 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,410,308
Number of Sequences: 1393205
Number of extensions: 12917909
Number of successful extensions: 141720
Number of sequences better than 10.0: 741
Number of HSP's better than 10.0 without gapping: 61217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113413
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
