Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020098A_C01 KMC020098A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181746.1| hypothetical protein; protein id: At2g42160.1 [... 80 2e-14
dbj|BAC43163.1| unknown protein [Arabidopsis thaliana] gi|284168... 80 2e-14
ref|NP_011853.1| Hypothetical ORF; Yhl010cp [Saccharomyces cerev... 43 0.003
sp|Q09298|YQO9_CAEEL Hypothetical protein EEED8.9 in chromosome ... 40 0.017
ref|NP_495016.1| BRAP2 (67.4 kD) [Caenorhabditis elegans] gi|152... 40 0.017
>ref|NP_181746.1| hypothetical protein; protein id: At2g42160.1 [Arabidopsis
thaliana] gi|7487419|pir||T00926 hypothetical protein
At2g42160 [imported] - Arabidopsis thaliana
gi|2673908|gb|AAB88642.1| hypothetical protein
[Arabidopsis thaliana]
Length = 506
Score = 79.7 bits (195), Expect = 2e-14
Identities = 40/84 (47%), Positives = 58/84 (68%), Gaps = 1/84 (1%)
Frame = -2
Query: 586 QEMWRNKVKEAEQWEATSMESFNERKLDLEEQIRDIKIFLEAQKTIDKM-SDSNGIKDGT 410
Q+ WR K KE E+ EA + S +E DL+EQIRDI +F+EA+KT+ KM SD++GI++GT
Sbjct: 423 QDTWRKKAKEIEEREAALLGSKDEMITDLQEQIRDITVFIEAKKTLKKMSSDTDGIREGT 482
Query: 409 VLPVAYEQSSSGNSKKNRKSGRRR 338
VLPV + ++ +KS RR+
Sbjct: 483 VLPVPISPEPVSSVRRQKKSNRRK 506
>dbj|BAC43163.1| unknown protein [Arabidopsis thaliana] gi|28416863|gb|AAO42962.1|
At2g42160 [Arabidopsis thaliana]
Length = 112
Score = 79.7 bits (195), Expect = 2e-14
Identities = 40/84 (47%), Positives = 58/84 (68%), Gaps = 1/84 (1%)
Frame = -2
Query: 586 QEMWRNKVKEAEQWEATSMESFNERKLDLEEQIRDIKIFLEAQKTIDKM-SDSNGIKDGT 410
Q+ WR K KE E+ EA + S +E DL+EQIRDI +F+EA+KT+ KM SD++GI++GT
Sbjct: 29 QDTWRKKAKEIEEREAALLGSKDEMITDLQEQIRDITVFIEAKKTLKKMSSDTDGIREGT 88
Query: 409 VLPVAYEQSSSGNSKKNRKSGRRR 338
VLPV + ++ +KS RR+
Sbjct: 89 VLPVPISPEPVSSVRRQKKSNRRK 112
>ref|NP_011853.1| Hypothetical ORF; Yhl010cp [Saccharomyces cerevisiae]
gi|731596|sp|P38748|YHB0_YEAST Hypothetical 67.5 kDa
protein in PRPS4-STE20 intergenic region
gi|626567|pir||S46825 hypothetical protein YHL010c -
yeast (Saccharomyces cerevisiae)
gi|2289881|gb|AAB65064.1| unknown [Saccharomyces
cerevisiae]
Length = 585
Score = 43.1 bits (100), Expect = 0.003
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Frame = -2
Query: 562 KEAEQWEATSMESFNERKLDLEEQIRDIKIFLEAQKTIDKMSDSNGIKDGTVL---PVAY 392
K+ EQ E + ++ E K DLEEQ++D+ +L++Q+ +S +K+GT+L P
Sbjct: 511 KKQEQLEREN-KALEESKQDLEEQVKDLMFYLDSQEKFKDADES--VKEGTILIQQPHGA 567
Query: 391 EQSSSGNSK--KNRKSGR 344
Q+S K KN+K+G+
Sbjct: 568 AQASKSKKKRNKNKKAGK 585
>sp|Q09298|YQO9_CAEEL Hypothetical protein EEED8.9 in chromosome II gi|7498397|pir||T15919
hypothetical protein EEED8.9 - Caenorhabditis elegans
Length = 1238
Score = 40.4 bits (93), Expect = 0.017
Identities = 21/80 (26%), Positives = 44/80 (54%), Gaps = 2/80 (2%)
Frame = -2
Query: 586 QEMWRNKVKEAEQWEATSMESFNERKLDLEEQIRDIKIFLEAQKTIDKMSDSNGI--KDG 413
Q++W+ +V++ + + T+ + ++ DL+ Q+ D+ + E Q + + D+ I ++
Sbjct: 1156 QQVWKGQVEKLIESQKTARTEYEKKIEDLQSQVNDLLMHFETQNKLKEQLDAGKITQEEI 1215
Query: 412 TVLPVAYEQSSSGNSKKNRK 353
T V + SSS + K NRK
Sbjct: 1216 TESQVELDSSSSSSRKLNRK 1235
>ref|NP_495016.1| BRAP2 (67.4 kD) [Caenorhabditis elegans]
gi|15277376|gb|AAK93844.1|U23484_8 Hypothetical protein
EEED8.16 [Caenorhabditis elegans]
Length = 590
Score = 40.4 bits (93), Expect = 0.017
Identities = 21/80 (26%), Positives = 44/80 (54%), Gaps = 2/80 (2%)
Frame = -2
Query: 586 QEMWRNKVKEAEQWEATSMESFNERKLDLEEQIRDIKIFLEAQKTIDKMSDSNGI--KDG 413
Q++W+ +V++ + + T+ + ++ DL+ Q+ D+ + E Q + + D+ I ++
Sbjct: 508 QQVWKGQVEKLIESQKTARTEYEKKIEDLQSQVNDLLMHFETQNKLKEQLDAGKITQEEI 567
Query: 412 TVLPVAYEQSSSGNSKKNRK 353
T V + SSS + K NRK
Sbjct: 568 TESQVELDSSSSSSRKLNRK 587
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,542,781
Number of Sequences: 1393205
Number of extensions: 9888297
Number of successful extensions: 31331
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 30650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31325
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
