Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020060A_C01 KMC020060A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568706.1| expressed protein; protein id: At5g49100.1, sup... 119 2e-26
gb|AAM61310.1| unknown [Arabidopsis thaliana] 119 2e-26
dbj|BAA32781.1| immediate-early protein [Canine herpesvirus] 43 0.003
sp|P19893|VIE2_HCMVA 45 kDa immediate-early protein 2 (IE2) (UL1... 41 0.008
ref|NP_783796.1| UL122; IE2 [Human herpesvirus 5] gi|27808741|tp... 41 0.008
>ref|NP_568706.1| expressed protein; protein id: At5g49100.1, supported by cDNA:
116332., supported by cDNA: gi_18377645 [Arabidopsis
thaliana] gi|10176943|dbj|BAB10092.1|
gene_id:K20J1.7~unknown protein [Arabidopsis thaliana]
gi|18377646|gb|AAL66973.1| unknown protein [Arabidopsis
thaliana] gi|22136864|gb|AAM91776.1| unknown protein
[Arabidopsis thaliana]
Length = 396
Score = 119 bits (298), Expect = 2e-26
Identities = 68/130 (52%), Positives = 81/130 (62%), Gaps = 1/130 (0%)
Frame = -3
Query: 539 RVESQREGKTKTGENHHHN-HRCMKERVRCGGLFSGFMMTSSSSSSSSSSYWVSSSADDA 363
RVESQREG G N ++E VRCGG+F GFM+ +SSSSSSSSS WVSSS+
Sbjct: 270 RVESQREGNNNKGNKVSSNPSNGVREMVRCGGIFGGFMIMTSSSSSSSSSSWVSSSS--- 326
Query: 362 AAMNSGKSTAVALSHGARGRSWGWAFASPMRAFSSKNSSKDNKRDIIRDANDKNATPNLS 183
A + + + G R RSWGW+FASPMRAF+S + S R I KN TPNL
Sbjct: 327 AEHHHHHNHNMGHGGGGRNRSWGWSFASPMRAFTSSSYSGKRGRTISDSTTSKNTTPNLG 386
Query: 182 AIPSLLAARS 153
AIPSLL+ RS
Sbjct: 387 AIPSLLSVRS 396
>gb|AAM61310.1| unknown [Arabidopsis thaliana]
Length = 388
Score = 119 bits (298), Expect = 2e-26
Identities = 68/130 (52%), Positives = 81/130 (62%), Gaps = 1/130 (0%)
Frame = -3
Query: 539 RVESQREGKTKTGENHHHNH-RCMKERVRCGGLFSGFMMTSSSSSSSSSSYWVSSSADDA 363
RVESQREG G N ++E VRCGG+F GFM+ +SSSSSSSSS WVSSS+
Sbjct: 262 RVESQREGNNNKGNKVSSNSSNGVREMVRCGGIFGGFMIMTSSSSSSSSSSWVSSSS--- 318
Query: 362 AAMNSGKSTAVALSHGARGRSWGWAFASPMRAFSSKNSSKDNKRDIIRDANDKNATPNLS 183
A + + + G R RSWGW+FASPMRAF+S + S R I KN TPNL
Sbjct: 319 AEHHHHHNHNMGHGGGGRNRSWGWSFASPMRAFTSSSYSGKRGRTISDSTTSKNTTPNLG 378
Query: 182 AIPSLLAARS 153
AIPSLL+ RS
Sbjct: 379 AIPSLLSVRS 388
>dbj|BAA32781.1| immediate-early protein [Canine herpesvirus]
Length = 1383
Score = 42.7 bits (99), Expect = 0.003
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Frame = -3
Query: 458 RCGGLFSGFMMTSSSSSSSSSSYWVSSSADDAAAMNSGKSTAVALSHGARGRSWGWAFAS 279
RCG S +SSSSSS+SSS SSS+ + + ST L R W + S
Sbjct: 247 RCGSNNSSRSSSSSSSSSTSSSSSSSSSSSSSEVSSKNSSTKAKLPSKRNNREWSDSEES 306
Query: 278 -----PMRAFSSKNSSKDNKRDIIRDANDKNATPNLSAIPSLLAA 159
+ S K + + + D NA PN S P + A
Sbjct: 307 CCNSPVSKVMSVKKAKQSQTPETSEDVRKINALPNESTTPEMRVA 351
>sp|P19893|VIE2_HCMVA 45 kDa immediate-early protein 2 (IE2) (UL122 protein)
gi|73654|pir||EDBEM4 45K immediate-early-2 protein -
human cytomegalovirus (strain AD169)
gi|1813972|emb|CAA35324.1| IE2A (27) [Human herpesvirus
5]
Length = 411
Score = 41.2 bits (95), Expect = 0.008
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Frame = -3
Query: 425 TSSSSSSSSSSYWVSSSADDAAAMNSGKSTAVALSHGARG---------------RSWGW 291
+SSSSSSS SS S S + +SG +V SH RG +S G
Sbjct: 89 SSSSSSSSCSSASDSESESEEMKCSSGGGASVTSSHHGRGGFGGAASSSLLSCGHQSSGG 148
Query: 290 AFASPMRAFSSKNSSKDNK--RDIIRDANDKNATPNL 186
A P + S + S DN+ R+I++D N TPN+
Sbjct: 149 ASTGPRKKKSKRISELDNEKVRNIMKDKNTPFCTPNV 185
>ref|NP_783796.1| UL122; IE2 [Human herpesvirus 5] gi|27808741|tpg|DAA00111.1| TPA:
UL122; IE2 [Human herpesvirus 5]
Length = 580
Score = 41.2 bits (95), Expect = 0.008
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Frame = -3
Query: 425 TSSSSSSSSSSYWVSSSADDAAAMNSGKSTAVALSHGARG---------------RSWGW 291
+SSSSSSS SS S S + +SG +V SH RG +S G
Sbjct: 258 SSSSSSSSCSSASDSESESEEMKCSSGGGASVTSSHHGRGGFGGAASSSLLSCGHQSSGG 317
Query: 290 AFASPMRAFSSKNSSKDNK--RDIIRDANDKNATPNL 186
A P + S + S DN+ R+I++D N TPN+
Sbjct: 318 ASTGPRKKKSKRISELDNEKVRNIMKDKNTPFCTPNV 354
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,643,207
Number of Sequences: 1393205
Number of extensions: 10131521
Number of successful extensions: 103084
Number of sequences better than 10.0: 261
Number of HSP's better than 10.0 without gapping: 53975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81892
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
