Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC020014A_C01 KMC020014A_c01
(424 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD38912.1|AF128815_1 42Sp50 [Oryzias latipes] 32 2.4
ref|NP_066531.1| NADH dehydrogenase subunit 4 [Naegleria gruberi... 30 7.0
gb|AAH44567.1| pleckstrin homology domain containing, family A (... 30 9.1
ref|NP_061964.2| pleckstrin homology domain containing, family A... 30 9.1
dbj|BAA90927.1| unnamed protein product [Homo sapiens] 30 9.1
>gb|AAD38912.1|AF128815_1 42Sp50 [Oryzias latipes]
Length = 456
Score = 31.6 bits (70), Expect = 2.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 314 KESPTQVQTCLEAVTSFDPPVKLHLNSPCRLPL 412
+E P+ +T LE + S PPV+ +N P RLPL
Sbjct: 219 REGPSTGKTLLEVLDSIQPPVRT-INKPLRLPL 250
>ref|NP_066531.1| NADH dehydrogenase subunit 4 [Naegleria gruberi]
gi|10444243|gb|AAG17809.1|AF288092_34 NADH dehydrogenase
subunit 4 [Naegleria gruberi]
Length = 474
Score = 30.0 bits (66), Expect = 7.0
Identities = 14/36 (38%), Positives = 21/36 (57%), Gaps = 1/36 (2%)
Frame = -1
Query: 160 FLSPLTKRILFTYPPLITIVSCMSIM-TDFIILKCI 56
FL PL + Y PL+ +++C+ I T F+ LK I
Sbjct: 245 FLMPLFPNSTYYYSPLVILIACLGIFYTSFVTLKQI 280
>gb|AAH44567.1| pleckstrin homology domain containing, family A (phosphoinositide
binding specific) member 3 [Homo sapiens]
Length = 300
Score = 29.6 bits (65), Expect = 9.1
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 242 ANVKFRDWRRIYTTQLHHPGPLVIKESPTQVQTCLEAVT 358
AN KF+ QLHHP PLV SP+ VQ +V+
Sbjct: 177 ANAKFKP----EMFQLHHPDPLVSPVSPSPVQMMKRSVS 211
>ref|NP_061964.2| pleckstrin homology domain containing, family A (phosphoinositide
binding specific) member 3; pleckstrin homology
domain-containing, family A (phosphoinositide binding
specific) member 3 [Homo sapiens]
gi|10198128|gb|AAG15199.1|AF286162_1 Phosphoinositol
4-phosphate Adaptor Protein-1 [Homo sapiens]
Length = 300
Score = 29.6 bits (65), Expect = 9.1
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 242 ANVKFRDWRRIYTTQLHHPGPLVIKESPTQVQTCLEAVT 358
AN KF+ QLHHP PLV SP+ VQ +V+
Sbjct: 177 ANAKFKP----EMFQLHHPDPLVSPVSPSPVQMMKRSVS 211
>dbj|BAA90927.1| unnamed protein product [Homo sapiens]
Length = 228
Score = 29.6 bits (65), Expect = 9.1
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 242 ANVKFRDWRRIYTTQLHHPGPLVIKESPTQVQTCLEAVT 358
AN KF+ QLHHP PLV SP+ VQ +V+
Sbjct: 105 ANAKFKP----EMFQLHHPDPLVSPVSPSPVQMMKRSVS 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,177,230
Number of Sequences: 1393205
Number of extensions: 7399720
Number of successful extensions: 15214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15212
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
