Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019993A_C01 KMC019993A_c01
(439 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB24066.1| unnamed protein product [Mus musculus] 33 1.1
ref|XP_146151.1| RIKEN cDNA 1600016N20 [Mus musculus] 33 1.1
ref|XP_219480.1| similar to hypothetical protein FLJ36004 [Homo ... 32 1.4
ref|NP_497635.1| Predicted CDS, WSN domain containing protein fa... 31 3.1
gb|ZP_00070156.1| hypothetical protein [Oenococcus oeni MCW] 30 5.2
>dbj|BAB24066.1| unnamed protein product [Mus musculus]
Length = 200
Score = 32.7 bits (73), Expect = 1.1
Identities = 17/32 (53%), Positives = 17/32 (53%)
Frame = +3
Query: 225 NPQGQSRSNHSTGRCFIITGLGSKIFRDNLCW 320
NPQGQ S H C LGSKIF DN W
Sbjct: 4 NPQGQVLSEHQATPCVT---LGSKIFTDNTDW 32
>ref|XP_146151.1| RIKEN cDNA 1600016N20 [Mus musculus]
Length = 609
Score = 32.7 bits (73), Expect = 1.1
Identities = 17/32 (53%), Positives = 17/32 (53%)
Frame = +3
Query: 225 NPQGQSRSNHSTGRCFIITGLGSKIFRDNLCW 320
NPQGQ S H C LGSKIF DN W
Sbjct: 413 NPQGQVLSEHQATPCVT---LGSKIFTDNTDW 441
>ref|XP_219480.1| similar to hypothetical protein FLJ36004 [Homo sapiens] [Rattus
norvegicus]
Length = 606
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/32 (53%), Positives = 17/32 (53%)
Frame = +3
Query: 225 NPQGQSRSNHSTGRCFIITGLGSKIFRDNLCW 320
NPQGQ S H C LGSKIF DN W
Sbjct: 411 NPQGQVLSEHQAVPCVT---LGSKIFTDNTDW 439
>ref|NP_497635.1| Predicted CDS, WSN domain containing protein family member
[Caenorhabditis elegans] gi|7508035|pir||T15124
hypothetical protein T20B6.2 - Caenorhabditis elegans
gi|1946989|gb|AAB52891.1| Hypothetical protein T20B6.2
[Caenorhabditis elegans]
Length = 715
Score = 31.2 bits (69), Expect = 3.1
Identities = 19/55 (34%), Positives = 26/55 (46%)
Frame = -3
Query: 428 ALMASEFF*F*FFCSPSGDQPKDYWFVHGPFYPCPVPA*IIPENFASQPGDDEAS 264
A M F + F +P+ Q D +FV+ P + P P I P AS PG A+
Sbjct: 459 AKMDLNFKKYNFQSAPASLQALDLFFVNYPLHARPPPTPITPSGSASAPGSGSAT 513
>gb|ZP_00070156.1| hypothetical protein [Oenococcus oeni MCW]
Length = 421
Score = 30.4 bits (67), Expect = 5.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 219 PYKEAGRVFIKLVQVLHHLALFE*INQP*LILGIVML 109
P + G++ + L+Q + H L E +NQ +I G+V +
Sbjct: 371 PVLDGGKILLNLIQAIRHKPLSEKVNQWVMIAGVVFM 407
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,733,184
Number of Sequences: 1393205
Number of extensions: 9150144
Number of successful extensions: 19035
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19028
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
