Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019887A_C01 KMC019887A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_289616.1| orf, hypothetical protein [Escherichia coli O15... 34 1.5
ref|NP_417508.1| orf, hypothetical protein [Escherichia coli K12... 34 1.5
dbj|BAA96774.2| unnamed protein product [Oryza sativa (japonica ... 33 3.4
gb|AAD41482.1|AF135258_1 44 kDa major outer membrane protein [An... 32 5.8
gb|AAL02052.1|AF192265_1 beta-galactosidase I [Bifidobacterium i... 31 9.9
>ref|NP_289616.1| orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
gi|15833178|ref|NP_311951.1| hypothetical protein
[Escherichia coli O157:H7] gi|25391437|pir||D91119
hypothetical protein ECs3924 [imported] - Escherichia
coli (strain O157:H7, substrain RIMD 0509952)
gi|25497230|pir||C85964 hypothetical protein ygiA
[imported] - Escherichia coli (strain O157:H7,
substrain EDL933) gi|12517614|gb|AAG58175.1|AE005533_8
orf, hypothetical protein [Escherichia coli O157:H7
EDL933] gi|13363397|dbj|BAB37347.1| hypothetical protein
[Escherichia coli O157:H7]
Length = 86
Score = 33.9 bits (76), Expect = 1.5
Identities = 23/72 (31%), Positives = 36/72 (49%)
Frame = -2
Query: 536 VDEKGETGYLPTISPFLKESRHTVCTDARLYNDGPAQTVMDDESPPAKAEAQVRRPLRIP 357
V ++ +TGYLP SPF + R + LY+DG V +D++ K + P +P
Sbjct: 12 VRQRKDTGYLPHSSPFSLQFRPAI-----LYSDGYLPQVPEDKNETDK----IHTPRIVP 62
Query: 356 RKLRDLRSTLSQ 321
+KL S S+
Sbjct: 63 QKLERTPSDTSR 74
>ref|NP_417508.1| orf, hypothetical protein [Escherichia coli K12]
gi|24114337|ref|NP_708847.1| orf, conserved hypothetical
protein [Shigella flexneri 2a str. 301]
gi|26249613|ref|NP_755653.1| Conserved hypothetical
protein [Escherichia coli CFT073] gi|96011|pir||S11458
hypothetical 9.9K protein (tolC-ribB/htrP intergenic
region) - Escherichia coli (strain K-12)
gi|43108|emb|CAA37983.1| unidentified reading frame
[Escherichia coli] gi|882566|gb|AAA69204.1| ORF_o87;
alternate name ygiA; urf of X00016
gi|1789414|gb|AAC76072.1| orf, hypothetical protein
[Escherichia coli K12]
gi|24053498|gb|AAN44554.1|AE015319_11 orf, conserved
hypothetical protein [Shigella flexneri 2a str. 301]
gi|26110021|gb|AAN82226.1|AE016766_314 Conserved
hypothetical protein [Escherichia coli CFT073]
Length = 86
Score = 33.9 bits (76), Expect = 1.5
Identities = 23/72 (31%), Positives = 36/72 (49%)
Frame = -2
Query: 536 VDEKGETGYLPTISPFLKESRHTVCTDARLYNDGPAQTVMDDESPPAKAEAQVRRPLRIP 357
V ++ +TGYLP SPF + R + LY+DG V +D++ K + P +P
Sbjct: 12 VRQRKDTGYLPHSSPFSLQFRPAI-----LYSDGYLPLVPEDKNETDK----IHTPRIVP 62
Query: 356 RKLRDLRSTLSQ 321
+KL S S+
Sbjct: 63 QKLERTPSDTSR 74
>dbj|BAA96774.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 32.7 bits (73), Expect = 3.4
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 578 HSVVPSTXHQCFKYVDEKG-ETGYLPTISPF-LKESRHTVCTDARLY 444
+ VVPST HQC K++D G + SP+ ++ES H DA+ Y
Sbjct: 1479 YRVVPSTLHQCLKFLDGNGVQQRITSNFSPYTIQESYH---ADAKYY 1522
>gb|AAD41482.1|AF135258_1 44 kDa major outer membrane protein [Anaplasma phagocytophila]
Length = 82
Score = 32.0 bits (71), Expect = 5.8
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -2
Query: 506 PTISPFLKESRHTVCTDARLYNDGPAQTVMDDESPPAKAE 387
P IS F+ H V D +YND PAQ ++DD SP + +
Sbjct: 22 PEISAFVGGFYHRVVGDG-VYNDLPAQRLVDDTSPAGRTK 60
>gb|AAL02052.1|AF192265_1 beta-galactosidase I [Bifidobacterium infantis]
Length = 1022
Score = 31.2 bits (69), Expect = 9.9
Identities = 16/43 (37%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Frame = -2
Query: 539 YVDEKGETGYLPTISPF-LKESRHTVCTDARLYNDGPAQTVMD 414
+V+ GE G LPTI PF ++ + T+ R + GP +T +D
Sbjct: 855 HVEYPGEQGDLPTIPPFGIEWTLPVQYTNLRFFGTGPEETYLD 897
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,646,570
Number of Sequences: 1393205
Number of extensions: 10977217
Number of successful extensions: 28692
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 27639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28684
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
