Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019885A_C01 KMC019885A_c01
(877 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_705389.1| hypothetical protein [Plasmodium falciparum 3D7... 47 4e-04
ref|NP_297916.1| hypothetical protein [Xylella fastidiosa 9a5c] ... 44 0.003
ref|NP_593182.1| hypothetical serine-rich protein [Schizosacchar... 42 0.016
pir||T19307 hypothetical protein C15C8.2 - Caenorhabditis elegans 41 0.021
ref|NP_704767.1| hypothetical protein [Plasmodium falciparum 3D7... 40 0.035
>ref|NP_705389.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615634|emb|CAD52626.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 709
Score = 47.0 bits (110), Expect = 4e-04
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Frame = +1
Query: 151 LCLIGKKI*KKNLEN*ESRTFFIFFQHFHHLQHKTQKNPENKKSISSQTHSPSNTLHKNI 330
+CL + KK + E++ I+ H H N N TH +N + NI
Sbjct: 447 VCLYKYNMEKKEKQKKENKDNNIYIDHTHD-------NINNNNIYIDHTHDNNNNNNNNI 499
Query: 331 NLLHPHDL----NHLHHLHPHHPLNNTKSPFFLKHQSTTTPNPFHFSFHSE 471
+ H HD N+++ H H +NN + ++ H N FH +FH++
Sbjct: 500 YIDHTHDNINNNNNIYIDHTHDNINNNNNNIYIDHTYDKNCNHFHNNFHND 550
>ref|NP_297916.1| hypothetical protein [Xylella fastidiosa 9a5c]
gi|11361512|pir||H82781 hypothetical protein XF0626
[imported] - Xylella fastidiosa (strain 9a5c)
gi|9105500|gb|AAF83436.1|AE003908_4 hypothetical protein
[Xylella fastidiosa 9a5c]
Length = 203
Score = 43.9 bits (102), Expect = 0.003
Identities = 34/122 (27%), Positives = 57/122 (45%), Gaps = 1/122 (0%)
Frame = +1
Query: 280 SISSQTHSPSNTLHKNINLLHPHDL-NHLHHLHPHHPLNNTKSPFFLKHQSTTTPNPFHF 456
++ + +HS S+ LH I HP L H HL PH + + + H S TP+ H
Sbjct: 4 NVRASSHSISSMLH--ITYPHPSALVTHTSHLIPH-------TSYLIPHTSHLTPHTSHL 54
Query: 457 SFHSEIERPQPRSEVIPSTKSLSPFSSKLRSGSSTTT*ISQHLRHVDLHSAKRCAITTSV 636
+ H+ P S + P T L+P +S L + T+ ++ H H+ H++ T+ +
Sbjct: 55 TPHTSHLTPH-TSHLTPHTSHLTPHTSHL---TPHTSHLTPHTSHLTPHTSHLTPHTSHL 110
Query: 637 EP 642
P
Sbjct: 111 TP 112
Score = 41.2 bits (95), Expect = 0.021
Identities = 34/128 (26%), Positives = 49/128 (37%), Gaps = 5/128 (3%)
Frame = +1
Query: 235 HHLQHKTQKNPENKKSISSQTHSPSNTLHKNINLLH--PHDLN---HLHHLHPHHPLNNT 399
H + H + P +H +T H + H PH + H HL PH
Sbjct: 32 HLIPHTSYLIPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTP 91
Query: 400 KSPFFLKHQSTTTPNPFHFSFHSEIERPQPRSEVIPSTKSLSPFSSKLRSGSSTTT*ISQ 579
+ H S TP+ H + H+ P S + P T L+P +S L +S T +
Sbjct: 92 HTSHLTPHTSHLTPHTSHLTPHTSHLTPH-TSHLTPHTSHLTPHTSHLTPHTSHLTPHTS 150
Query: 580 HLRHVDLH 603
HL LH
Sbjct: 151 HLTPHTLH 158
Score = 39.3 bits (90), Expect = 0.079
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Frame = +1
Query: 229 HFHHLQ-HKTQKNPENKKSISSQTHSPSNTLHKNINLLH--PHDLN---HLHHLHPHHPL 390
H HL H + P +H +T H + H PH + H HL PH
Sbjct: 78 HTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSH 137
Query: 391 NNTKSPFFLKHQSTTTPNPFHFSFHSEIERPQPRSEVIPSTKSLSPFSSKLRSGSSTTT* 570
+ H S TP+ H + H+ P S + P T L+P +S L +S T
Sbjct: 138 LTPHTSHLTPHTSHLTPHTLHLTPHTSHLTPH-TSHLTPHTSHLTPHTSHLTPHTSHLTP 196
Query: 571 ISQH 582
+ H
Sbjct: 197 HTSH 200
>ref|NP_593182.1| hypothetical serine-rich protein [Schizosaccharomyces pombe]
gi|7492039|pir||T38265 hypothetical serine-rich protein
- fission yeast (Schizosaccharomyces pombe)
gi|2465152|emb|CAB16881.1| putative guanine nucleotide
exchange factor; coiled-coil domain is essential for
function in S. cerevisiae SEC2 (J Cell Biol
110(6):1897-909); possibly required for vesicular
transport; similar to S. cerevisiae SEC2
[Schizosaccharomyces pombe]
Length = 527
Score = 41.6 bits (96), Expect = 0.016
Identities = 41/144 (28%), Positives = 62/144 (42%), Gaps = 10/144 (6%)
Frame = +1
Query: 241 LQHKTQKNPENKKSISSQTHSPSNTLHKNINLLHPHDLNHL-HHLHPHHP---LNNTKSP 408
L H+T N S+Q S S + ++ ++ + + H+ HP HP N +P
Sbjct: 259 LGHRTNNNQNQLIRFSTQIRSSSTSPPRSPLIISDSPSSSIIHNPHPTHPSASAMNYMNP 318
Query: 409 FFLK-HQSTTTPNPFH-----FSFHSEIERPQPRSEVIPSTKSLSPFSSKLRSGSSTTT* 570
FL+ H P F +S + PR+ V PST S S S S++
Sbjct: 319 CFLEFHAFFNYPMKFARSRSAYSTSANYSNTPPRNTVTPSTARSSTLSQNPSSSSNSIPL 378
Query: 571 ISQHLRHVDLHSAKRCAITTSVEP 642
IS++LR D KRC + +EP
Sbjct: 379 ISRNLR--DFSFFKRC-LEEDIEP 399
>pir||T19307 hypothetical protein C15C8.2 - Caenorhabditis elegans
Length = 647
Score = 41.2 bits (95), Expect = 0.021
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 226 QHFHHLQ--HKTQKN-PENKKSISSQTHSPSNTLHKNINLLHPHDLNHLHHLHPHHP 387
QH HHLQ H++Q N P I + PSN N H H HLHH P HP
Sbjct: 577 QHQHHLQQQHQSQPNHPLQMTPIPPMSCPPSNYGQSNFLFHHQHLNQHLHHSQPPHP 633
Score = 32.3 bits (72), Expect = 9.6
Identities = 18/68 (26%), Positives = 26/68 (37%), Gaps = 20/68 (29%)
Frame = +1
Query: 325 NINLLHPHDLNHLHHLHPHHPLNNTKSP-------------FFLKHQ-------STTTPN 444
N + H H L H P+HPL T P F HQ + P+
Sbjct: 573 NFAMQHQHHLQQQHQSQPNHPLQMTPIPPMSCPPSNYGQSNFLFHHQHLNQHLHHSQPPH 632
Query: 445 PFHFSFHS 468
P+HF +++
Sbjct: 633 PYHFDYYN 640
>ref|NP_704767.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505128|emb|CAD51910.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4202
Score = 40.4 bits (93), Expect = 0.035
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +1
Query: 262 NPENKKSISSQTHSPSNTLHKNINLLHPHDLNHLHHLHPHHPLNNTKSPFFLKHQSTTTP 441
N N + ++ H +N+ H N N H H+ NH HH + HH NN H + +
Sbjct: 1837 NNNNNNNNNNHHHHNNNSHHNNNNNHHHHNNNHHHHNNNHHHHNNNH-----HHHNNNSN 1891
Query: 442 NPFHFSFH 465
N F++ ++
Sbjct: 1892 NIFNYIYY 1899
Score = 33.5 bits (75), Expect = 4.3
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 211 FFIFFQHFHHLQHKTQKNPENKKSISSQTHSPSNTL---HKNINLLHPHDLNHLHHLHPH 381
+F+ + +++ + + N S++S ++ +N H N N H ++ NH HH + H
Sbjct: 1810 YFLNMTNINYINNMSDDKCVNNISVNSNNNNNNNNNNHHHHNNNSHHNNNNNHHHHNNNH 1869
Query: 382 HPLNN 396
H NN
Sbjct: 1870 HHHNN 1874
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 841,118,257
Number of Sequences: 1393205
Number of extensions: 20720600
Number of successful extensions: 93762
Number of sequences better than 10.0: 143
Number of HSP's better than 10.0 without gapping: 70867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90245
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47103382053
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
