Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019882A_C01 KMC019882A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P12859|G3PB_PEA Glyceraldehyde 3-phosphate dehydrogenase B, c... 308 2e-83
emb|CAA33262.1| precursor C-terminal fragment (AA -80 to 367) [P... 303 7e-82
pir||DESPGB glyceraldehyde-3-phosphate dehydrogenase (NADP) (ph... 266 1e-70
ref|NP_174996.1| glyceraldehyde-3-phosphate dehydrogenase; prote... 263 1e-69
sp|P12860|G3PB_SPIOL Glyceraldehyde 3-phosphate dehydrogenase B,... 262 2e-69
>sp|P12859|G3PB_PEA Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) gi|66027|pir||DEPMNB
glyceraldehyde-3-phosphate dehydrogenase (NADP)
(phosphorylating) (EC 1.2.1.13) B precursor, chloroplast
- garden pea gi|309671|gb|AAA84543.1|
glyceraldehyde-3-phosphate dehydrogenase B subunit
Length = 451
Score = 308 bits (790), Expect = 2e-83
Identities = 151/175 (86%), Positives = 166/175 (94%)
Frame = +2
Query: 32 THAALASTRIPTNTKFSSKASHSFPAQCSSKRLEVTEFSGLRSSSCVTYANNARESSFFD 211
THAALASTRIPTNT+F SK SHSFP+QC+SKRLEV EFSGL+S+SC++Y ++AR+SSF+D
Sbjct: 3 THAALASTRIPTNTRFPSKTSHSFPSQCASKRLEVGEFSGLKSTSCISYVHSARDSSFYD 62
Query: 212 VVAAQLTPKAIGSTAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGG 391
VVAAQLT KA GSTAV+G TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGG
Sbjct: 63 VVAAQLTSKANGSTAVKGVTVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGG 122
Query: 392 VKNASHLLKYDSMLGTFKADVKILNENTITVDGKPIKVVANRDPLKLPWAELGID 556
VKNASHLLKYDSMLGTFKA+VKILN TITVDGKPIKVV++RDPLKLPWAELGID
Sbjct: 123 VKNASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELGID 177
>emb|CAA33262.1| precursor C-terminal fragment (AA -80 to 367) [Pisum sativum]
Length = 447
Score = 303 bits (777), Expect = 7e-82
Identities = 149/173 (86%), Positives = 164/173 (94%)
Frame = +2
Query: 38 AALASTRIPTNTKFSSKASHSFPAQCSSKRLEVTEFSGLRSSSCVTYANNARESSFFDVV 217
AALASTRIPTNT+F SK SHSFP+QC+SKRLEV EFSGL+S+SC++Y ++AR+SSF+DVV
Sbjct: 1 AALASTRIPTNTRFPSKTSHSFPSQCASKRLEVGEFSGLKSTSCISYVHSARDSSFYDVV 60
Query: 218 AAQLTPKAIGSTAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVK 397
AAQLT KA GSTAV+G TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVK
Sbjct: 61 AAQLTSKANGSTAVKGVTVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVK 120
Query: 398 NASHLLKYDSMLGTFKADVKILNENTITVDGKPIKVVANRDPLKLPWAELGID 556
NASHLLKYDSMLGTFKA+VKILN TITVDGKPIKVV++RDPLKLPWAELGID
Sbjct: 121 NASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELGID 173
>pir||DESPGB glyceraldehyde-3-phosphate dehydrogenase (NADP) (phosphorylating)
(EC 1.2.1.13) B precursor, chloroplast - spinach
Length = 451
Score = 266 bits (680), Expect = 1e-70
Identities = 132/177 (74%), Positives = 155/177 (86%), Gaps = 2/177 (1%)
Frame = +2
Query: 32 THAALASTRIPTNTKFSSKAS--HSFPAQCSSKRLEVTEFSGLRSSSCVTYANNARESSF 205
+HAALA +RIP +T+ +SKAS +SFP QCS KRL+V +FSGLRSS+ VT+ RE+SF
Sbjct: 3 SHAALAPSRIPASTRLASKASQQYSFPTQCSFKRLDVADFSGLRSSNSVTFT---REASF 59
Query: 206 FDVVAAQLTPKAIGSTAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDS 385
DV+AAQLT K G+ VRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+VVNDS
Sbjct: 60 HDVIAAQLTTKPTGAAPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 119
Query: 386 GGVKNASHLLKYDSMLGTFKADVKILNENTITVDGKPIKVVANRDPLKLPWAELGID 556
GGVK+A+HLLKYDS+LGTFKADVKI++ T ++DGKPIKVV+NRDPLKLPWAELGID
Sbjct: 120 GGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGID 176
>ref|NP_174996.1| glyceraldehyde-3-phosphate dehydrogenase; protein id: At1g42970.1,
supported by cDNA: gi_14517407, supported by cDNA:
gi_14532673, supported by cDNA: gi_19310804, supported
by cDNA: gi_20465255 [Arabidopsis thaliana]
gi|20455491|sp|P25857|G3PB_ARATH Glyceraldehyde
3-phosphate dehydrogenase B, chloroplast precursor
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) gi|25284331|pir||C96497
glyceraldehyde-3-phosphate dehydrogenase [imported] -
Arabidopsis thaliana gi|166708|gb|AAA32795.1|
glyceraldehyde-3-phosphate dehydrogenase
gi|12323057|gb|AAG51517.1|AC068324_5
glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis
thaliana] gi|14517408|gb|AAK62594.1| At1g42970/F13A11_3
[Arabidopsis thaliana] gi|14532674|gb|AAK64065.1|
putative glyceraldehyde-3-phosphate dehydrogenase
[Arabidopsis thaliana] gi|19310805|gb|AAL85133.1|
putative glyceraldehyde-3-phosphate dehydrogenase
[Arabidopsis thaliana] gi|20465256|gb|AAM19948.1|
At1g42970/F13A11_3 [Arabidopsis thaliana]
gi|22655284|gb|AAM98232.1| unknown protein [Arabidopsis
thaliana] gi|25090331|gb|AAN72278.1| At1g42970/F13A11_3
[Arabidopsis thaliana]
Length = 447
Score = 263 bits (671), Expect = 1e-69
Identities = 137/177 (77%), Positives = 151/177 (84%), Gaps = 2/177 (1%)
Frame = +2
Query: 32 THAALASTRIPTNTKFSSKAS-HSFPAQCSSKRLEVTEFSGLRSSSCVTYANNARESSFF 208
THAALA +RIP + SK++ HSFPAQCSSKRLEV EFSGLR SS E+SFF
Sbjct: 3 THAALAVSRIPVTQRLQSKSAIHSFPAQCSSKRLEVAEFSGLRMSSI------GGEASFF 56
Query: 209 DVVAAQLTPKAIG-STAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDS 385
D VAAQ+ PKA+ ST VRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEV+V+NDS
Sbjct: 57 DAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDS 116
Query: 386 GGVKNASHLLKYDSMLGTFKADVKILNENTITVDGKPIKVVANRDPLKLPWAELGID 556
GGVKNASHLLKYDSMLGTFKA+VKI++ TI+VDGK IKVV+NRDPLKLPWAELGID
Sbjct: 117 GGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGID 173
>sp|P12860|G3PB_SPIOL Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) gi|21252|emb|CAA33263.1| precursor (AA -83 to
368) [Spinacia oleracea] gi|2529372|gb|AAD10218.1|
NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B [Spinacia oleracea]
Length = 451
Score = 262 bits (670), Expect = 2e-69
Identities = 131/177 (74%), Positives = 154/177 (86%), Gaps = 2/177 (1%)
Frame = +2
Query: 32 THAALASTRIPTNTKFSSKAS--HSFPAQCSSKRLEVTEFSGLRSSSCVTYANNARESSF 205
+HAALA +RIP +T+ +SKAS +SF QCS KRL+V +FSGLRSS+ VT+ RE+SF
Sbjct: 3 SHAALAPSRIPASTRLASKASQQYSFLTQCSFKRLDVADFSGLRSSNSVTFT---REASF 59
Query: 206 FDVVAAQLTPKAIGSTAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDS 385
DV+AAQLT K G+ VRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+VVNDS
Sbjct: 60 HDVIAAQLTTKPTGAAPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 119
Query: 386 GGVKNASHLLKYDSMLGTFKADVKILNENTITVDGKPIKVVANRDPLKLPWAELGID 556
GGVK+A+HLLKYDS+LGTFKADVKI++ T ++DGKPIKVV+NRDPLKLPWAELGID
Sbjct: 120 GGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGID 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,910,412
Number of Sequences: 1393205
Number of extensions: 10770670
Number of successful extensions: 33158
Number of sequences better than 10.0: 1166
Number of HSP's better than 10.0 without gapping: 30660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32063
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
