Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019880A_C01 KMC019880A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09642 hypothetical protein precursor - alfalfa gi|537313|g... 245 2e-64
pir||T10174 hypothetical protein - castor bean gi|1621268|emb|CA... 213 1e-54
ref|NP_196703.1| putative protein; protein id: At5g11420.1, supp... 203 1e-51
gb|AAN31807.1| unknown protein [Arabidopsis thaliana] 203 1e-51
gb|AAM63507.1| unknown [Arabidopsis thaliana] 203 1e-51
>pir||T09642 hypothetical protein precursor - alfalfa gi|537313|gb|AAB41813.1|
unknown protein [Medicago sativa]
Length = 375
Score = 245 bits (625), Expect = 2e-64
Identities = 122/148 (82%), Positives = 134/148 (90%)
Frame = +3
Query: 72 SSASTSTMKGRFMFLLVLLCASFHVSLSFKDGLVANGDFELGPKPSDLKGTVVIGGKSAI 251
S+ +ST F+F+ +L C++FHVSLS DGLVANG+FELGPKPS+LKGTVV GGK++I
Sbjct: 3 SNFHSSTTMNVFLFMSLLFCSTFHVSLSLIDGLVANGNFELGPKPSELKGTVVTGGKNSI 62
Query: 252 PEWEISGFVEYIKSGQKQGDMLLVVPEGAYAVRLGNEASIKQRIKVIKGMYYSITLSVAR 431
PEWEISG VEYIKSGQKQGDMLLVVPEGAYAVRLGNEASIKQRIKVIKGMYYSIT VAR
Sbjct: 63 PEWEISGLVEYIKSGQKQGDMLLVVPEGAYAVRLGNEASIKQRIKVIKGMYYSITFMVAR 122
Query: 432 TCAQEERINVSVAPDFGVIPIQTLYTSS 515
TCAQEERIN+SVAPDFGVIPIQTLYTSS
Sbjct: 123 TCAQEERINISVAPDFGVIPIQTLYTSS 150
>pir||T10174 hypothetical protein - castor bean gi|1621268|emb|CAB02653.1|
unknown [Ricinus communis]
Length = 364
Score = 213 bits (541), Expect = 1e-54
Identities = 106/136 (77%), Positives = 123/136 (89%)
Frame = +3
Query: 108 MFLLVLLCASFHVSLSFKDGLVANGDFELGPKPSDLKGTVVIGGKSAIPEWEISGFVEYI 287
+ L VLL A+ SLS +DGLV NG+FEL PKPSD+KGT VIG K+AIPEWEISGFVEYI
Sbjct: 5 ILLSVLLLATCQFSLSIRDGLVKNGNFELAPKPSDMKGTQVIG-KNAIPEWEISGFVEYI 63
Query: 288 KSGQKQGDMLLVVPEGAYAVRLGNEASIKQRIKVIKGMYYSITLSVARTCAQEERINVSV 467
KSGQKQGDMLLVVPEGAYAVRLGNEASIKQR++VIKGMYYSIT S ARTCAQEE++NVSV
Sbjct: 64 KSGQKQGDMLLVVPEGAYAVRLGNEASIKQRMRVIKGMYYSITFSAARTCAQEEKLNVSV 123
Query: 468 APDFGVIPIQTLYTSS 515
+PD+GV+P+QT+Y+S+
Sbjct: 124 SPDWGVLPMQTMYSSN 139
>ref|NP_196703.1| putative protein; protein id: At5g11420.1, supported by cDNA:
25522., supported by cDNA: gi_15028264, supported by
cDNA: gi_20465272 [Arabidopsis thaliana]
gi|11281889|pir||T48501 hypothetical protein F15N18.10 -
Arabidopsis thaliana gi|7573399|emb|CAB87702.1| putative
protein [Arabidopsis thaliana]
gi|15028265|gb|AAK76721.1| unknown protein [Arabidopsis
thaliana] gi|20465273|gb|AAM20000.1| unknown protein
[Arabidopsis thaliana]
Length = 366
Score = 203 bits (516), Expect = 1e-51
Identities = 100/139 (71%), Positives = 115/139 (81%)
Frame = +3
Query: 99 GRFMFLLVLLCASFHVSLSFKDGLVANGDFELGPKPSDLKGTVVIGGKSAIPEWEISGFV 278
G FL VLL A+ + F DG++ NGDFELGPKPSD+KGT VI K AIP WE+SGFV
Sbjct: 4 GSLSFLFVLLIATITSVICFSDGMLPNGDFELGPKPSDMKGTQVIN-KKAIPSWELSGFV 62
Query: 279 EYIKSGQKQGDMLLVVPEGAYAVRLGNEASIKQRIKVIKGMYYSITLSVARTCAQEERIN 458
EYIKSGQKQGDMLLVVP G +A+RLGNEASIKQR+ V KGMYYS+T S ARTCAQ+ER+N
Sbjct: 63 EYIKSGQKQGDMLLVVPAGKFAIRLGNEASIKQRLNVTKGMYYSLTFSAARTCAQDERLN 122
Query: 459 VSVAPDFGVIPIQTLYTSS 515
+SVAPD GVIPIQT+Y+SS
Sbjct: 123 ISVAPDSGVIPIQTVYSSS 141
>gb|AAN31807.1| unknown protein [Arabidopsis thaliana]
Length = 366
Score = 203 bits (516), Expect = 1e-51
Identities = 100/139 (71%), Positives = 115/139 (81%)
Frame = +3
Query: 99 GRFMFLLVLLCASFHVSLSFKDGLVANGDFELGPKPSDLKGTVVIGGKSAIPEWEISGFV 278
G FL VLL A+ + F DG++ NGDFELGPKPSD+KGT VI K AIP WE+SGFV
Sbjct: 4 GSLSFLFVLLIATITSVICFSDGMLPNGDFELGPKPSDMKGTQVIN-KKAIPSWELSGFV 62
Query: 279 EYIKSGQKQGDMLLVVPEGAYAVRLGNEASIKQRIKVIKGMYYSITLSVARTCAQEERIN 458
EYIKSGQKQGDMLLVVP G +A+RLGNEASIKQR+ V KGMYYS+T S ARTCAQ+ER+N
Sbjct: 63 EYIKSGQKQGDMLLVVPAGKFAIRLGNEASIKQRLNVTKGMYYSLTFSAARTCAQDERLN 122
Query: 459 VSVAPDFGVIPIQTLYTSS 515
+SVAPD GVIPIQT+Y+SS
Sbjct: 123 ISVAPDSGVIPIQTVYSSS 141
>gb|AAM63507.1| unknown [Arabidopsis thaliana]
Length = 366
Score = 203 bits (516), Expect = 1e-51
Identities = 100/139 (71%), Positives = 115/139 (81%)
Frame = +3
Query: 99 GRFMFLLVLLCASFHVSLSFKDGLVANGDFELGPKPSDLKGTVVIGGKSAIPEWEISGFV 278
G FL VLL A+ + F DG++ NGDFELGPKPSD+KGT VI K AIP WE+SGFV
Sbjct: 4 GSLSFLFVLLIATITSVICFSDGMLPNGDFELGPKPSDMKGTQVIN-KKAIPSWELSGFV 62
Query: 279 EYIKSGQKQGDMLLVVPEGAYAVRLGNEASIKQRIKVIKGMYYSITLSVARTCAQEERIN 458
EYIKSGQKQGDMLLVVP G +A+RLGNEASIKQR+ V KGMYYS+T S ARTCAQ+ER+N
Sbjct: 63 EYIKSGQKQGDMLLVVPAGKFAIRLGNEASIKQRLNVTKGMYYSLTFSAARTCAQDERLN 122
Query: 459 VSVAPDFGVIPIQTLYTSS 515
+SVAPD GVIPIQT+Y+SS
Sbjct: 123 ISVAPDSGVIPIQTVYSSS 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,673,089
Number of Sequences: 1393205
Number of extensions: 11693673
Number of successful extensions: 35327
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 33808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35190
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
