KMC019877A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC019877A_C01 KMC019877A_c01
atgtaataataacaatgctggtgctagctcaaggttgcaagttgcaaatcaaaactgaac
atcatagaataacactataaACTGAAATTAACTAAATTATTTAATTAACCAAATGATGAT
GAAGAACAAGTAAGAACCCTAACTACATCGATCTCCATTAAGTTGCACTTTCATCAACAT
CAAAGTTTCTTTTTTCTTTCACACATAATGCTCTTTCTCTTTCTCTCCTTCTCTCTTTCA
CCACCATGAAAGAGAATCGGAGAGAATGATCGGAAAAAGTTAATTAGGGTTTCTTACCAA
GCGTGTTCTTGTTATTGTGCATCCAAACCTTGAGAACGTTTCTCCTCACACAAGTTTCAG
CACAGAATTGTTCAACAGCAGCTTCTTGATGCTTCTGGATTCTCCAACCAAGCTCTTCTG
CAAAAGCCAGCATCTTCTCCTTCTGCTCCGGCGTGAACTTGGTCCTGTACCTCTTTTTCA
TTCCACCTCCGCCGCCTCCACCACTGCTGCTAGGGTTAGACATGTCTTCCTCCTCCCTGC
TGAATCCACCTCCTGAAGTCGCCGGTGGAAGTGCTAACGGCCGGTGGG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019877A_C01 KMC019877A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194197.1| putative protein; protein id: At4g24660.1, supp... 136 2e-31
emb|CAC34447.1| ZF-HD homeobox protein [Flaveria bidentis] 134 7e-31
gb|AAD39591.1|AC007858_5 10A19I.6 [Oryza sativa] 114 1e-24
ref|NP_201344.1| hypothetical protein common family; protein id:... 108 7e-23
gb|AAM10791.1| hypothetical protein At2g02540/T822.16 [Arabidops... 99 4e-20
>ref|NP_194197.1| putative protein; protein id: At4g24660.1, supported by cDNA:
gi_16612294 [Arabidopsis thaliana]
gi|7485966|pir||T05568 hypothetical protein F22K18.140 -
Arabidopsis thaliana gi|4220524|emb|CAA22997.1| putative
protein [Arabidopsis thaliana]
gi|7269316|emb|CAB79376.1| putative protein [Arabidopsis
thaliana] gi|16612295|gb|AAL27510.1|AF439841_1
AT4g24660/F22K18_140 [Arabidopsis thaliana]
gi|21928089|gb|AAM78073.1| AT4g24660/F22K18_140
[Arabidopsis thaliana]
Length = 220
Score = 136 bits (342), Expect = 2e-31
Identities = 69/94 (73%), Positives = 74/94 (78%)
Frame = -3
Query: 568 PPATSGGGFSREEEDMSNPSSSGGGGGGGMKKRYRTKFTPEQKEKMLAFAEELGWRIQKH 389
PPA SG +EED SNPSSSGG KR+RTKFT EQKEKMLAFAE LGWRIQKH
Sbjct: 137 PPAASG-----DEEDTSNPSSSGG-----TTKRFRTKFTAEQKEKMLAFAERLGWRIQKH 186
Query: 388 QEAAVEQFCAETCVRRNVLKVWMHNNKNTLGKKP 287
+ AVEQFCAET VRR VLK+WMHNNKN+LGKKP
Sbjct: 187 DDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKKP 220
>emb|CAC34447.1| ZF-HD homeobox protein [Flaveria bidentis]
Length = 237
Score = 134 bits (338), Expect = 7e-31
Identities = 68/102 (66%), Positives = 83/102 (80%), Gaps = 3/102 (2%)
Frame = -3
Query: 583 RPLALPPATSGGGFSREE-EDMSNPSSSGGGG--GGGMKKRYRTKFTPEQKEKMLAFAEE 413
R LALP SR++ +++SNPSSSGGGG G G KKR+RTKFT +QK++MLAF+E
Sbjct: 142 RQLALPST------SRDDLDEISNPSSSGGGGVGGSGSKKRFRTKFTQDQKDRMLAFSEA 195
Query: 412 LGWRIQKHQEAAVEQFCAETCVRRNVLKVWMHNNKNTLGKKP 287
LGWRIQKH EAAV+QFC ET V+R+VLKVWMHNNK+T+GKKP
Sbjct: 196 LGWRIQKHDEAAVQQFCNETGVKRHVLKVWMHNNKHTIGKKP 237
>gb|AAD39591.1|AC007858_5 10A19I.6 [Oryza sativa]
Length = 376
Score = 114 bits (284), Expect = 1e-24
Identities = 52/90 (57%), Positives = 64/90 (70%)
Frame = -3
Query: 565 PATSGGGFSREEEDMSNPSSSGGGGGGGMKKRYRTKFTPEQKEKMLAFAEELGWRIQKHQ 386
P+ SGG + + P SS G +KR+RTKFTPEQKE+MLAFAE +GWR+QK
Sbjct: 264 PSGSGGTTTESSSEERGPPSSSAAAAQGRRKRFRTKFTPEQKEQMLAFAERVGWRMQKQD 323
Query: 385 EAAVEQFCAETCVRRNVLKVWMHNNKNTLG 296
EA VEQFCA+ VRR V KVWMHNNK+++G
Sbjct: 324 EALVEQFCAQVGVRRQVFKVWMHNNKSSIG 353
>ref|NP_201344.1| hypothetical protein common family; protein id: At5g65410.1
[Arabidopsis thaliana] gi|9759621|dbj|BAB11563.1|
contains similarity to unknown
protein~gene_id:MNA5.14~pir||T05568 [Arabidopsis
thaliana] gi|27311559|gb|AAO00745.1| putative protein
[Arabidopsis thaliana]
Length = 279
Score = 108 bits (269), Expect = 7e-23
Identities = 53/97 (54%), Positives = 67/97 (68%)
Frame = -3
Query: 577 LALPPATSGGGFSREEEDMSNPSSSGGGGGGGMKKRYRTKFTPEQKEKMLAFAEELGWRI 398
LALPP R E+ M S+ GGG ++KR+RTKFT EQKE+MLA AE +GWRI
Sbjct: 165 LALPPPQR----ERSEDPMETSSAEAGGG---IRKRHRTKFTAEQKERMLALAERIGWRI 217
Query: 397 QKHQEAAVEQFCAETCVRRNVLKVWMHNNKNTLGKKP 287
Q+ + +++FC ET V R VLKVW+HNNK+TLGK P
Sbjct: 218 QRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSP 254
>gb|AAM10791.1| hypothetical protein At2g02540/T822.16 [Arabidopsis thaliana]
Length = 310
Score = 99.0 bits (245), Expect = 4e-20
Identities = 50/111 (45%), Positives = 65/111 (58%), Gaps = 15/111 (13%)
Frame = -3
Query: 577 LALPPATSGGGFSREEEDMSNPSSSGGGG---------------GGGMKKRYRTKFTPEQ 443
+ +P + G + E ED+ GGG G KKR+RTKFT EQ
Sbjct: 176 MIMPIGVTTAGSNSESEDLME--EEGGGSLTFRQPPPPPSPYSYGHNQKKRFRTKFTQEQ 233
Query: 442 KEKMLAFAEELGWRIQKHQEAAVEQFCAETCVRRNVLKVWMHNNKNTLGKK 290
KEKM++FAE +GW+IQ+ +E+ V+Q C E +RR VLKVWMHNNK L KK
Sbjct: 234 KEKMISFAERVGWKIQRQEESVVQQLCQEIGIRRRVLKVWMHNNKQNLSKK 284
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,703,054
Number of Sequences: 1393205
Number of extensions: 12055832
Number of successful extensions: 104389
Number of sequences better than 10.0: 178
Number of HSP's better than 10.0 without gapping: 52450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85857
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MFB083a07_f |
BP040043 |
1 |
536 |
2 |
MFB082f02_f |
BP040012 |
81 |
588 |
3 |
MFB077d03_f |
BP039618 |
136 |
587 |
|
Lotus japonicus
Kazusa DNA Research Institute