KMC019877A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC019877A_C01 KMC019877A_c01
atgtaataataacaatgctggtgctagctcaaggttgcaagttgcaaatcaaaactgaac
atcatagaataacactataaACTGAAATTAACTAAATTATTTAATTAACCAAATGATGAT
GAAGAACAAGTAAGAACCCTAACTACATCGATCTCCATTAAGTTGCACTTTCATCAACAT
CAAAGTTTCTTTTTTCTTTCACACATAATGCTCTTTCTCTTTCTCTCCTTCTCTCTTTCA
CCACCATGAAAGAGAATCGGAGAGAATGATCGGAAAAAGTTAATTAGGGTTTCTTACCAA
GCGTGTTCTTGTTATTGTGCATCCAAACCTTGAGAACGTTTCTCCTCACACAAGTTTCAG
CACAGAATTGTTCAACAGCAGCTTCTTGATGCTTCTGGATTCTCCAACCAAGCTCTTCTG
CAAAAGCCAGCATCTTCTCCTTCTGCTCCGGCGTGAACTTGGTCCTGTACCTCTTTTTCA
TTCCACCTCCGCCGCCTCCACCACTGCTGCTAGGGTTAGACATGTCTTCCTCCTCCCTGC
TGAATCCACCTCCTGAAGTCGCCGGTGGAAGTGCTAACGGCCGGTGGG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC019877A_C01 KMC019877A_c01
         (588 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_194197.1| putative protein; protein id: At4g24660.1, supp...   136  2e-31
emb|CAC34447.1| ZF-HD homeobox protein [Flaveria bidentis]            134  7e-31
gb|AAD39591.1|AC007858_5 10A19I.6 [Oryza sativa]                      114  1e-24
ref|NP_201344.1| hypothetical protein common family; protein id:...   108  7e-23
gb|AAM10791.1| hypothetical protein At2g02540/T822.16 [Arabidops...    99  4e-20

>ref|NP_194197.1| putative protein; protein id: At4g24660.1, supported by cDNA:
           gi_16612294 [Arabidopsis thaliana]
           gi|7485966|pir||T05568 hypothetical protein F22K18.140 -
           Arabidopsis thaliana gi|4220524|emb|CAA22997.1| putative
           protein [Arabidopsis thaliana]
           gi|7269316|emb|CAB79376.1| putative protein [Arabidopsis
           thaliana] gi|16612295|gb|AAL27510.1|AF439841_1
           AT4g24660/F22K18_140 [Arabidopsis thaliana]
           gi|21928089|gb|AAM78073.1| AT4g24660/F22K18_140
           [Arabidopsis thaliana]
          Length = 220

 Score =  136 bits (342), Expect = 2e-31
 Identities = 69/94 (73%), Positives = 74/94 (78%)
 Frame = -3

Query: 568 PPATSGGGFSREEEDMSNPSSSGGGGGGGMKKRYRTKFTPEQKEKMLAFAEELGWRIQKH 389
           PPA SG     +EED SNPSSSGG       KR+RTKFT EQKEKMLAFAE LGWRIQKH
Sbjct: 137 PPAASG-----DEEDTSNPSSSGG-----TTKRFRTKFTAEQKEKMLAFAERLGWRIQKH 186

Query: 388 QEAAVEQFCAETCVRRNVLKVWMHNNKNTLGKKP 287
            + AVEQFCAET VRR VLK+WMHNNKN+LGKKP
Sbjct: 187 DDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKKP 220

>emb|CAC34447.1| ZF-HD homeobox protein [Flaveria bidentis]
          Length = 237

 Score =  134 bits (338), Expect = 7e-31
 Identities = 68/102 (66%), Positives = 83/102 (80%), Gaps = 3/102 (2%)
 Frame = -3

Query: 583 RPLALPPATSGGGFSREE-EDMSNPSSSGGGG--GGGMKKRYRTKFTPEQKEKMLAFAEE 413
           R LALP        SR++ +++SNPSSSGGGG  G G KKR+RTKFT +QK++MLAF+E 
Sbjct: 142 RQLALPST------SRDDLDEISNPSSSGGGGVGGSGSKKRFRTKFTQDQKDRMLAFSEA 195

Query: 412 LGWRIQKHQEAAVEQFCAETCVRRNVLKVWMHNNKNTLGKKP 287
           LGWRIQKH EAAV+QFC ET V+R+VLKVWMHNNK+T+GKKP
Sbjct: 196 LGWRIQKHDEAAVQQFCNETGVKRHVLKVWMHNNKHTIGKKP 237

>gb|AAD39591.1|AC007858_5 10A19I.6 [Oryza sativa]
          Length = 376

 Score =  114 bits (284), Expect = 1e-24
 Identities = 52/90 (57%), Positives = 64/90 (70%)
 Frame = -3

Query: 565 PATSGGGFSREEEDMSNPSSSGGGGGGGMKKRYRTKFTPEQKEKMLAFAEELGWRIQKHQ 386
           P+ SGG  +    +   P SS      G +KR+RTKFTPEQKE+MLAFAE +GWR+QK  
Sbjct: 264 PSGSGGTTTESSSEERGPPSSSAAAAQGRRKRFRTKFTPEQKEQMLAFAERVGWRMQKQD 323

Query: 385 EAAVEQFCAETCVRRNVLKVWMHNNKNTLG 296
           EA VEQFCA+  VRR V KVWMHNNK+++G
Sbjct: 324 EALVEQFCAQVGVRRQVFKVWMHNNKSSIG 353

>ref|NP_201344.1| hypothetical protein common family; protein id: At5g65410.1
           [Arabidopsis thaliana] gi|9759621|dbj|BAB11563.1|
           contains similarity to unknown
           protein~gene_id:MNA5.14~pir||T05568 [Arabidopsis
           thaliana] gi|27311559|gb|AAO00745.1| putative protein
           [Arabidopsis thaliana]
          Length = 279

 Score =  108 bits (269), Expect = 7e-23
 Identities = 53/97 (54%), Positives = 67/97 (68%)
 Frame = -3

Query: 577 LALPPATSGGGFSREEEDMSNPSSSGGGGGGGMKKRYRTKFTPEQKEKMLAFAEELGWRI 398
           LALPP        R E+ M   S+  GGG   ++KR+RTKFT EQKE+MLA AE +GWRI
Sbjct: 165 LALPPPQR----ERSEDPMETSSAEAGGG---IRKRHRTKFTAEQKERMLALAERIGWRI 217

Query: 397 QKHQEAAVEQFCAETCVRRNVLKVWMHNNKNTLGKKP 287
           Q+  +  +++FC ET V R VLKVW+HNNK+TLGK P
Sbjct: 218 QRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSP 254

>gb|AAM10791.1| hypothetical protein At2g02540/T822.16 [Arabidopsis thaliana]
          Length = 310

 Score = 99.0 bits (245), Expect = 4e-20
 Identities = 50/111 (45%), Positives = 65/111 (58%), Gaps = 15/111 (13%)
 Frame = -3

Query: 577 LALPPATSGGGFSREEEDMSNPSSSGGGG---------------GGGMKKRYRTKFTPEQ 443
           + +P   +  G + E ED+      GGG                G   KKR+RTKFT EQ
Sbjct: 176 MIMPIGVTTAGSNSESEDLME--EEGGGSLTFRQPPPPPSPYSYGHNQKKRFRTKFTQEQ 233

Query: 442 KEKMLAFAEELGWRIQKHQEAAVEQFCAETCVRRNVLKVWMHNNKNTLGKK 290
           KEKM++FAE +GW+IQ+ +E+ V+Q C E  +RR VLKVWMHNNK  L KK
Sbjct: 234 KEKMISFAERVGWKIQRQEESVVQQLCQEIGIRRRVLKVWMHNNKQNLSKK 284

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,703,054
Number of Sequences: 1393205
Number of extensions: 12055832
Number of successful extensions: 104389
Number of sequences better than 10.0: 178
Number of HSP's better than 10.0 without gapping: 52450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85857
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MFB083a07_f BP040043 1 536
2 MFB082f02_f BP040012 81 588
3 MFB077d03_f BP039618 136 587




Lotus japonicus
Kazusa DNA Research Institute