Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019871A_C01 KMC019871A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07398 myb-related transcription factor THM6 - tomato gi|14... 58 6e-08
pir||JQ0956 myb-related protein 306 - garden snapdragon gi|25682... 38 0.069
gb|AAO51565.1| similar to Dictyostelium discoideum (Slime mold).... 36 0.34
gb|AAD03652.1| unknown [Plasmodium falciparum] 36 0.34
ref|ZP_00031660.1| hypothetical protein [Burkholderia fungorum] 36 0.34
>pir||T07398 myb-related transcription factor THM6 - tomato
gi|1430848|emb|CAA67575.1| transcription factor
[Lycopersicon esculentum]
Length = 347
Score = 58.2 bits (139), Expect = 6e-08
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Frame = -2
Query: 541 NSVATQNSFNYNLNAAGTDTASSSGAKGISSTSAE-LSETFESLFGFESLESPNSDQFS- 368
NS +++ S N N A TD++S G + L E FESLFG ES ES +SD+ S
Sbjct: 220 NSESSKTSSN---NIATTDSSSCDGTPNAETKGGMGLMEAFESLFGLESFESSSSDELSQ 276
Query: 367 ---PSNLSPERKPDVNVIGPEMPLS-LLEKWLLDECSVN 263
P + E K + N E+PLS +LE WLLDE ++N
Sbjct: 277 TTTPEAIKIEIKKEENEHDVEVPLSIILENWLLDENTLN 315
>pir||JQ0956 myb-related protein 306 - garden snapdragon
gi|256828|gb|AAB23528.1| Myb oncoprotein homolog {clone
306} [Antirrhinum majus=snapdragons, J1:522, flowers,
Peptide, 316 aa]
Length = 316
Score = 38.1 bits (87), Expect = 0.069
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = -2
Query: 541 NSVATQNSFNYNLNAAGTDTASSSGAKGISSTSAELSETFESLFGFESLESPNSDQFSPS 362
+S +T SFNY T SS ++G ST+ + S + LE + +F +
Sbjct: 223 SSESTTTSFNYPSVCLST----SSPSEGAISTNFISFNSSNS----DILEDHDQAKFEAA 274
Query: 361 ----NLSPERKPDVNVIGPEMPLSLLEKWLLDE 275
N E KP ++ +MPLSLLEKWLLD+
Sbjct: 275 TNGVNFQDESKP---ILDNQMPLSLLEKWLLDD 304
>gb|AAO51565.1| similar to Dictyostelium discoideum (Slime mold). Developmental
protein DG1037 (Fragment)
Length = 509
Score = 35.8 bits (81), Expect = 0.34
Identities = 25/70 (35%), Positives = 34/70 (47%), Gaps = 1/70 (1%)
Frame = -2
Query: 538 SVATQNSFNYNLNAAGTDTASSSGAKGISSTSAELSETFESLFGFESLESPNSDQFSPSN 359
+V N+ N LN +G SS ++ S S +L GF L SPN SPSN
Sbjct: 292 NVNNNNNNNIKLNGSGDMDTSSDNNSSMNINSINNSS---NLNGFNGLSSPNQQPNSPSN 348
Query: 358 LS-PERKPDV 332
S P+R+ D+
Sbjct: 349 RSQPKRQRDL 358
>gb|AAD03652.1| unknown [Plasmodium falciparum]
Length = 304
Score = 35.8 bits (81), Expect = 0.34
Identities = 23/55 (41%), Positives = 31/55 (55%), Gaps = 6/55 (10%)
Frame = -2
Query: 493 GTDTASSSGAKGISSTSAELSETFESLFGFES---LES---PNSDQFSPSNLSPE 347
GT SGA+ +S+T EL ET+E +FG E+ L+S PN D S + S E
Sbjct: 99 GTKLTGGSGAEPMSTTEKELLETYEKVFGEENNIMLKSGMYPNGDSISDKSSSCE 153
>ref|ZP_00031660.1| hypothetical protein [Burkholderia fungorum]
Length = 792
Score = 35.8 bits (81), Expect = 0.34
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +3
Query: 243 KPKIFSGLTLHSSRSHFSSKDKGIS----GPITLTSGFLSGDKLDG 368
+P I G+T ++HF G+ GP+TLT+G+ GD+LDG
Sbjct: 133 QPSIAFGVTDIGGQTHFFRSKYGVVSQAFGPVTLTAGYGQGDRLDG 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,583,693
Number of Sequences: 1393205
Number of extensions: 7885157
Number of successful extensions: 24723
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 23438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24634
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
