Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019869A_C01 KMC019869A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197953.1| transcription factor TINY; protein id: At5g2581... 111 6e-24
ref|NP_196720.1| transcription factor TINY, putative; protein id... 97 2e-19
ref|NP_188249.1| transcription factor TINY, putative; protein id... 84 1e-15
ref|NP_683382.1| similar to putative AP2 domain transcription fa... 84 1e-15
ref|NP_177844.1| transcription factor TINY, putative; protein id... 84 2e-15
>ref|NP_197953.1| transcription factor TINY; protein id: At5g25810.1 [Arabidopsis
thaliana] gi|7488385|pir||T01076 transcription factor
TINY - Arabidopsis thaliana gi|1246403|emb|CAA64359.1|
TINY [Arabidopsis thaliana] gi|3406035|gb|AAC29139.1|
TINY [Arabidopsis thaliana]
Length = 218
Score = 111 bits (278), Expect = 6e-24
Identities = 63/118 (53%), Positives = 76/118 (64%), Gaps = 17/118 (14%)
Frame = -2
Query: 598 VAALAIKGSSAILNFPDLAGSLPRPESKSPRDVQAAAAKAASMAVSDSKTASH------- 440
VAAL+IKG+SAILNFPDLAGS PRP S SPRD+Q AA KAA M S S ++S
Sbjct: 77 VAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSSSLTFSSS 136
Query: 439 ---------CSYSSSSSEELGEIVELPRLGTSFE-IPDPGSELVFSDPVDGWPYSHTW 296
S S++ SEELGEIVELP LG+S++ + G+E +FSD D WPY W
Sbjct: 137 QSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSDSADLWPYPPQW 194
>ref|NP_196720.1| transcription factor TINY, putative; protein id: At5g11590.1
[Arabidopsis thaliana] gi|11282310|pir||T48518
transcription factor like protein - Arabidopsis thaliana
gi|7573416|emb|CAB87719.1| transcription factor like
protein [Arabidopsis thaliana]
Length = 236
Score = 96.7 bits (239), Expect = 2e-19
Identities = 62/129 (48%), Positives = 75/129 (58%), Gaps = 20/129 (15%)
Frame = -2
Query: 598 VAALAIKGSSAILNFPDLAGSLPRPESKSPRDVQAAAAKAASMAVS---DSKTASHCSYS 428
VAAL+IKG++AILNFP+LA S PRP S SPRD+Q AA KAA M + S T+S S S
Sbjct: 92 VAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTSFSSSTSSSSSLS 151
Query: 427 SSS---------------SEELGEIVELPRLGTSFEIPDP--GSELVFSDPVDGWPYSHT 299
S+S SEELGEIVELP LG S+++ G+E VF D VD Y
Sbjct: 152 STSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFVFYDSVDYCLYPPP 211
Query: 298 WYHDGQGIY 272
W + Y
Sbjct: 212 WGQSSEDNY 220
>ref|NP_188249.1| transcription factor TINY, putative; protein id: At3g16280.1
[Arabidopsis thaliana] gi|2062174|gb|AAB63648.1|
transcription factor (TINY) isolog [Arabidopsis
thaliana]
Length = 236
Score = 84.0 bits (206), Expect = 1e-15
Identities = 49/112 (43%), Positives = 65/112 (57%), Gaps = 15/112 (13%)
Frame = -2
Query: 598 VAALAIKGSSAILNFPDLAGSLPRPESKSPRDVQAAAAKAASMAVSD------------- 458
VAAL IKGSSA+LNFP+LA PRP S SP D+Q AAA+AA+M V +
Sbjct: 102 VAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEKDEAPEAPP 161
Query: 457 SKTASHCSYSSSSSEELGEIVELPRL--GTSFEIPDPGSELVFSDPVDGWPY 308
S +S+ + S E L +IVELP + G+ E ++L +S+P D W Y
Sbjct: 162 SSESSYVAAESEDEERLEKIVELPNIEEGSYDESVTSRADLAYSEPFDCWVY 213
>ref|NP_683382.1| similar to putative AP2 domain transcription factor; protein id:
At1g45194.1 [Arabidopsis thaliana]
gi|9279711|dbj|BAB01268.1| transcription factor
TINY-like protein [Arabidopsis thaliana]
Length = 254
Score = 84.0 bits (206), Expect = 1e-15
Identities = 49/112 (43%), Positives = 65/112 (57%), Gaps = 15/112 (13%)
Frame = -2
Query: 598 VAALAIKGSSAILNFPDLAGSLPRPESKSPRDVQAAAAKAASMAVSD------------- 458
VAAL IKGSSA+LNFP+LA PRP S SP D+Q AAA+AA+M V +
Sbjct: 120 VAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEKDEAPEAPP 179
Query: 457 SKTASHCSYSSSSSEELGEIVELPRL--GTSFEIPDPGSELVFSDPVDGWPY 308
S +S+ + S E L +IVELP + G+ E ++L +S+P D W Y
Sbjct: 180 SSESSYVAAESEDEERLEKIVELPNIEEGSYDESVTSRADLAYSEPFDCWVY 231
>ref|NP_177844.1| transcription factor TINY, putative; protein id: At1g77200.1
[Arabidopsis thaliana] gi|7487003|pir||T00449
hypothetical protein T14N5.6 - Arabidopsis thaliana
gi|3540200|gb|AAC34350.1| Similar to TINY [Arabidopsis
thaliana]
Length = 244
Score = 83.6 bits (205), Expect = 2e-15
Identities = 59/132 (44%), Positives = 73/132 (54%), Gaps = 31/132 (23%)
Frame = -2
Query: 595 AALAIKGSSAILNFPDLAGSLPRPESKSPRDVQAAAAKAASMAVSDSKTA---------- 446
AAL IKG+SA+LNFP+LA LPRP S SPRDVQAAAA AA+M S S ++
Sbjct: 85 AALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSSLVVSDPTTVI 144
Query: 445 -------SHCSYS--------------SSSSEELGEIVELPRLGTSFEIPDPGSELVFSD 329
S SYS +S++EEL EIVELP L TS++ + SE V+ D
Sbjct: 145 APAETQLSSSSYSTCTSSSLSPSSEEAASTAEELSEIVELPSLETSYD--ESLSEFVYVD 202
Query: 328 PVDGWPYSHTWY 293
+P S WY
Sbjct: 203 --SAYPPSSPWY 212
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,206,139
Number of Sequences: 1393205
Number of extensions: 13491441
Number of successful extensions: 56466
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 49511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55870
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
