Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019867A_C01 KMC019867A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S63667 phragmoplastin 12 - soybean gi|1217994|gb|AAB05992.1... 361 5e-99
gb|AAO16682.1| dynamin-like protein B [Arabidopsis thaliana] 359 2e-98
pir||S63668 phragmoplastin 5 - soybean gi|1218004|gb|AAC49183.1|... 358 2e-98
gb|AAM65743.1| dynamin-like protein [Arabidopsis thaliana] 358 4e-98
ref|NP_680376.1| dynamin-like protein (pir||S59558); protein id:... 358 4e-98
>pir||S63667 phragmoplastin 12 - soybean gi|1217994|gb|AAB05992.1| SDL
Length = 610
Score = 361 bits (926), Expect = 5e-99
Identities = 182/202 (90%), Positives = 195/202 (96%), Gaps = 1/202 (0%)
Frame = +1
Query: 1 IQLVNKIQRACTALGDHGEESALPTLWDALPSIAVVGGQSSGKSSVLESIVGKDFLPRGS 180
I LVNKIQRACTALGDHGE SALPTLWD+LP+IAVVGGQSSGKSSVLES+VGKDFLPRGS
Sbjct: 5 ISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGS 64
Query: 181 GIVTRRPLVLQLHKIDD-SREYAEFMHLPRKRFTDFAAVRQEIADETDRETGRSKGISSV 357
GIVTRRPLVLQLHKID+ SREYAEF+HLPRKRFTDF AVR+EI DETDRETGR+K ISSV
Sbjct: 65 GIVTRRPLVLQLHKIDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISSV 124
Query: 358 PIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVQDIENMVRAFIEKPNCIILAISPAN 537
PIHLSIYSPNVVNLTL+DLPGLTKVAVEGQPDSIV+DIE+MVR++IEKPNCIILAISPAN
Sbjct: 125 PIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPAN 184
Query: 538 QDLATSDAIKISREVDPKGERT 603
QDLATSDAIKISREVDP G+RT
Sbjct: 185 QDLATSDAIKISREVDPTGDRT 206
>gb|AAO16682.1| dynamin-like protein B [Arabidopsis thaliana]
Length = 610
Score = 359 bits (921), Expect = 2e-98
Identities = 180/202 (89%), Positives = 197/202 (97%), Gaps = 1/202 (0%)
Frame = +1
Query: 1 IQLVNKIQRACTALGDHGEESALPTLWDALPSIAVVGGQSSGKSSVLESIVGKDFLPRGS 180
I LVNKIQRACTALGDHGE S+LPTLWD+LP+IAVVGGQSSGKSSVLES+VGKDFLPRG+
Sbjct: 5 IALVNKIQRACTALGDHGEGSSLPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGA 64
Query: 181 GIVTRRPLVLQLHKIDDSREYAEFMHLPRKRFTDFAAVRQEIADETDRETGR-SKGISSV 357
GIVTRRPLVLQLH+ID+ +EYAEFMHLP+K+FTDFAAVRQEI+DETDRETGR SK IS+V
Sbjct: 65 GIVTRRPLVLQLHRIDEGKEYAEFMHLPKKKFTDFAAVRQEISDETDRETGRSSKVISTV 124
Query: 358 PIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVQDIENMVRAFIEKPNCIILAISPAN 537
PIHLSI+SPNVVNLTLVDLPGLTKVAV+GQP+SIVQDIENMVR+FIEKPNCIILAISPAN
Sbjct: 125 PIHLSIFSPNVVNLTLVDLPGLTKVAVDGQPESIVQDIENMVRSFIEKPNCIILAISPAN 184
Query: 538 QDLATSDAIKISREVDPKGERT 603
QDLATSDAIKISREVDPKG+RT
Sbjct: 185 QDLATSDAIKISREVDPKGDRT 206
>pir||S63668 phragmoplastin 5 - soybean gi|1218004|gb|AAC49183.1| SDL5A
Length = 610
Score = 358 bits (920), Expect = 2e-98
Identities = 181/202 (89%), Positives = 195/202 (95%), Gaps = 1/202 (0%)
Frame = +1
Query: 1 IQLVNKIQRACTALGDHGEESALPTLWDALPSIAVVGGQSSGKSSVLESIVGKDFLPRGS 180
I LVNKIQRACTALGDHGE SALPTLWD+LP+IAVVGGQSSGKSSVLES+VGKDFLPRGS
Sbjct: 5 ISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGS 64
Query: 181 GIVTRRPLVLQLHKIDD-SREYAEFMHLPRKRFTDFAAVRQEIADETDRETGRSKGISSV 357
GIVTRRPLVLQLHKI++ SREYAEF+HLPRKRFTDF AVR+EI DETDRETGR+K IS+V
Sbjct: 65 GIVTRRPLVLQLHKIEEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISTV 124
Query: 358 PIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVQDIENMVRAFIEKPNCIILAISPAN 537
PIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIV+DIE+MVR++IEKPNCIILAISPAN
Sbjct: 125 PIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPAN 184
Query: 538 QDLATSDAIKISREVDPKGERT 603
QDLATSDAIKISREVDP G+RT
Sbjct: 185 QDLATSDAIKISREVDPTGDRT 206
>gb|AAM65743.1| dynamin-like protein [Arabidopsis thaliana]
Length = 429
Score = 358 bits (918), Expect = 4e-98
Identities = 181/202 (89%), Positives = 194/202 (95%), Gaps = 1/202 (0%)
Frame = +1
Query: 1 IQLVNKIQRACTALGDHGEESALPTLWDALPSIAVVGGQSSGKSSVLESIVGKDFLPRGS 180
I LVNKIQRACTALGDHG+ SALPTLWD+LP+IAVVGGQSSGKSSVLESIVGKDFLPRGS
Sbjct: 5 ISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64
Query: 181 GIVTRRPLVLQLHKIDD-SREYAEFMHLPRKRFTDFAAVRQEIADETDRETGRSKGISSV 357
GIVTRRPLVLQL KIDD +REYAEF+HLPRK+FTDFAAVR+EI DETDRETGRSK ISSV
Sbjct: 65 GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSV 124
Query: 358 PIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVQDIENMVRAFIEKPNCIILAISPAN 537
PIHLSIYSPNVVNLTL+DLPGLTKVAV+GQ DSIV+DIENMVR++IEKPNCIILAISPAN
Sbjct: 125 PIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPAN 184
Query: 538 QDLATSDAIKISREVDPKGERT 603
QDLATSDAIKISREVDP G+RT
Sbjct: 185 QDLATSDAIKISREVDPSGDRT 206
>ref|NP_680376.1| dynamin-like protein (pir||S59558); protein id: At5g42080.2,
supported by cDNA: 42932. [Arabidopsis thaliana]
Length = 429
Score = 358 bits (918), Expect = 4e-98
Identities = 181/202 (89%), Positives = 194/202 (95%), Gaps = 1/202 (0%)
Frame = +1
Query: 1 IQLVNKIQRACTALGDHGEESALPTLWDALPSIAVVGGQSSGKSSVLESIVGKDFLPRGS 180
I LVNKIQRACTALGDHG+ SALPTLWD+LP+IAVVGGQSSGKSSVLESIVGKDFLPRGS
Sbjct: 5 ISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS 64
Query: 181 GIVTRRPLVLQLHKIDD-SREYAEFMHLPRKRFTDFAAVRQEIADETDRETGRSKGISSV 357
GIVTRRPLVLQL KIDD +REYAEF+HLPRK+FTDFAAVR+EI DETDRETGRSK ISSV
Sbjct: 65 GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSV 124
Query: 358 PIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVQDIENMVRAFIEKPNCIILAISPAN 537
PIHLSIYSPNVVNLTL+DLPGLTKVAV+GQ DSIV+DIENMVR++IEKPNCIILAISPAN
Sbjct: 125 PIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPAN 184
Query: 538 QDLATSDAIKISREVDPKGERT 603
QDLATSDAIKISREVDP G+RT
Sbjct: 185 QDLATSDAIKISREVDPSGDRT 206
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.316 0.135 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,231,843
Number of Sequences: 1393205
Number of extensions: 11579507
Number of successful extensions: 44367
Number of sequences better than 10.0: 299
Number of HSP's better than 10.0 without gapping: 41795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44014
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
