Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019865A_C01 KMC019865A_c01
(382 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42898.1| unknown protein [Arabidopsis thaliana] 104 3e-22
ref|NP_199987.1| putative protein; protein id: At5g51740.1 [Arab... 104 3e-22
gb|ZP_00122936.1| hypothetical protein [Haemophilus somnus 129PT] 45 3e-04
ref|NP_253322.1| hypothetical protein [Pseudomonas aeruginosa PA... 44 7e-04
ref|NP_518274.1| HYPOTHETICAL SIGNAL PEPTIDE PROTEIN [Ralstonia ... 41 0.003
>dbj|BAC42898.1| unknown protein [Arabidopsis thaliana]
Length = 442
Score = 104 bits (259), Expect = 3e-22
Identities = 53/73 (72%), Positives = 64/73 (87%), Gaps = 1/73 (1%)
Frame = -3
Query: 380 LLIASAGYDPRVAPKVYEKLGRVTGDFTLGNYISTHPSGKKRAELLAPAKIMEEALTIYK 201
LL+ASAGYDPRVAP VYEKLG++ GD LG+Y+STHPSGKKR++LLA A +MEEAL IY+
Sbjct: 371 LLLASAGYDPRVAPTVYEKLGKLGGD-ALGDYLSTHPSGKKRSKLLAQANVMEEALMIYR 429
Query: 200 NVRSGR-GVEGFL 165
V++GR GVEGFL
Sbjct: 430 EVQAGRTGVEGFL 442
>ref|NP_199987.1| putative protein; protein id: At5g51740.1 [Arabidopsis thaliana]
gi|10177873|dbj|BAB11243.1| contains similarity to
peptidase~gene_id:MIO24.13 [Arabidopsis thaliana]
Length = 485
Score = 104 bits (259), Expect = 3e-22
Identities = 53/73 (72%), Positives = 64/73 (87%), Gaps = 1/73 (1%)
Frame = -3
Query: 380 LLIASAGYDPRVAPKVYEKLGRVTGDFTLGNYISTHPSGKKRAELLAPAKIMEEALTIYK 201
LL+ASAGYDPRVAP VYEKLG++ GD LG+Y+STHPSGKKR++LLA A +MEEAL IY+
Sbjct: 414 LLLASAGYDPRVAPTVYEKLGKLGGD-ALGDYLSTHPSGKKRSKLLAQANVMEEALMIYR 472
Query: 200 NVRSGR-GVEGFL 165
V++GR GVEGFL
Sbjct: 473 EVQAGRTGVEGFL 485
>gb|ZP_00122936.1| hypothetical protein [Haemophilus somnus 129PT]
Length = 254
Score = 44.7 bits (104), Expect = 3e-04
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Frame = -3
Query: 377 LIASAGYDPRVAPKVYEKLGRVTGDF--TLGNYISTHPSGKKR-AELLAPAKIMEEALTI 207
L+A +GY+P+ AP+++EK+ + +G L ISTHP+ R A LL K+M +A+
Sbjct: 193 LMAKSGYNPKAAPQLWEKMKKASGGSKGLLDKLISTHPTDDARQANLL---KLMPQAIEY 249
Query: 206 YKN 198
YKN
Sbjct: 250 YKN 252
>ref|NP_253322.1| hypothetical protein [Pseudomonas aeruginosa PA01]
gi|11350226|pir||D83067 hypothetical protein PA4632
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9950885|gb|AAG08020.1|AE004877_7 hypothetical protein
[Pseudomonas aeruginosa PAO1]
Length = 273
Score = 43.5 bits (101), Expect = 7e-04
Identities = 22/65 (33%), Positives = 36/65 (54%)
Frame = -3
Query: 377 LIASAGYDPRVAPKVYEKLGRVTGDFTLGNYISTHPSGKKRAELLAPAKIMEEALTIYKN 198
L A AGY+P A +++K+GR +G + + STHPS R L A + + + +Y+
Sbjct: 211 LAARAGYNPEAAITLWQKMGRASGGASQPEFTSTHPSDSSRMANLQAA--IPKVMPLYQQ 268
Query: 197 VRSGR 183
R G+
Sbjct: 269 ARRGK 273
>ref|NP_518274.1| HYPOTHETICAL SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
gi|17427161|emb|CAD13681.1| HYPOTHETICAL SIGNAL PEPTIDE
PROTEIN [Ralstonia solanacearum]
Length = 314
Score = 41.2 bits (95), Expect = 0.003
Identities = 21/58 (36%), Positives = 36/58 (61%)
Frame = -3
Query: 377 LIASAGYDPRVAPKVYEKLGRVTGDFTLGNYISTHPSGKKRAELLAPAKIMEEALTIY 204
+ A AG+DPR A +++K+G + G ++STHPSG+ R +L ++ + E L +Y
Sbjct: 220 IAARAGFDPRAALTLWQKMGSI-GGAEQKQFLSTHPSGRSRMTVL--SRHLPETLPLY 274
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,687,238
Number of Sequences: 1393205
Number of extensions: 6803859
Number of successful extensions: 19183
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 18756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19173
length of database: 448,689,247
effective HSP length: 102
effective length of database: 306,582,337
effective search space used: 7357976088
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
