Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019862A_C01 KMC019862A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B86332 hypothetical protein F6F9.7 [imported] - Arabidopsis... 54 1e-06
ref|NP_173417.1| unknown protein; protein id: At1g19880.1 [Arabi... 54 1e-06
gb|AAM97024.1| unknown protein [Arabidopsis thaliana] gi|2319798... 54 1e-06
gb|AAL05844.1|AF410847_1 latency associated antigen [Ovine herpe... 50 3e-05
gb|EAA27185.1| predicted protein [Neurospora crassa] 50 3e-05
>pir||B86332 hypothetical protein F6F9.7 [imported] - Arabidopsis thaliana
gi|10086484|gb|AAG12544.1|AC007797_4 Unknown Protein
[Arabidopsis thaliana]
Length = 521
Score = 54.3 bits (129), Expect = 1e-06
Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Frame = -3
Query: 591 APKKPAKKGAKKGADHSKKRKKAKEPSDSEEEEEEDAEE-----------SDHSED--EV 451
APK+ A K+GA SKKRK +K SDSE++ +ED + SD+SED E
Sbjct: 423 APKQQAV--TKRGA--SKKRKASKASSDSEQDSDEDNSDKEKEVQGSDADSDYSEDGEEA 478
Query: 450 NGEAEVKRSRGGKTSGKGRGKAPKKSGAEVKGSGRGRGGAAA--AANKSGSSGKRGRPRK 277
NG+ + R G+GRG+ RGRGG + A + G+RGRPRK
Sbjct: 479 NGKKQSAR-------GRGRGR-----------GARGRGGRTSNGKAPPVKTGGRRGRPRK 520
Query: 276 S 274
S
Sbjct: 521 S 521
>ref|NP_173417.1| unknown protein; protein id: At1g19880.1 [Arabidopsis thaliana]
Length = 530
Score = 54.3 bits (129), Expect = 1e-06
Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Frame = -3
Query: 591 APKKPAKKGAKKGADHSKKRKKAKEPSDSEEEEEEDAEE-----------SDHSED--EV 451
APK+ A K+GA SKKRK +K SDSE++ +ED + SD+SED E
Sbjct: 432 APKQQAV--TKRGA--SKKRKASKASSDSEQDSDEDNSDKEKEVQGSDADSDYSEDGEEA 487
Query: 450 NGEAEVKRSRGGKTSGKGRGKAPKKSGAEVKGSGRGRGGAAA--AANKSGSSGKRGRPRK 277
NG+ + R G+GRG+ RGRGG + A + G+RGRPRK
Sbjct: 488 NGKKQSAR-------GRGRGR-----------GARGRGGRTSNGKAPPVKTGGRRGRPRK 529
Query: 276 S 274
S
Sbjct: 530 S 530
>gb|AAM97024.1| unknown protein [Arabidopsis thaliana] gi|23197984|gb|AAN15519.1|
unknown protein [Arabidopsis thaliana]
Length = 538
Score = 54.3 bits (129), Expect = 1e-06
Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Frame = -3
Query: 591 APKKPAKKGAKKGADHSKKRKKAKEPSDSEEEEEEDAEE-----------SDHSED--EV 451
APK+ A K+GA SKKRK +K SDSE++ +ED + SD+SED E
Sbjct: 440 APKQQAV--TKRGA--SKKRKASKASSDSEQDSDEDNSDKEKEVQGSDADSDYSEDGEEA 495
Query: 450 NGEAEVKRSRGGKTSGKGRGKAPKKSGAEVKGSGRGRGGAAA--AANKSGSSGKRGRPRK 277
NG+ + R G+GRG+ RGRGG + A + G+RGRPRK
Sbjct: 496 NGKKQSAR-------GRGRGR-----------GARGRGGRTSNGKAPPVKTGGRRGRPRK 537
Query: 276 S 274
S
Sbjct: 538 S 538
>gb|AAL05844.1|AF410847_1 latency associated antigen [Ovine herpesvirus 2]
Length = 495
Score = 49.7 bits (117), Expect = 3e-05
Identities = 25/95 (26%), Positives = 43/95 (44%)
Frame = -3
Query: 579 PAKKGAKKGADHSKKRKKAKEPSDSEEEEEEDAEESDHSEDEVNGEAEVKRSRGGKTSGK 400
P + ++ + ++ ++ +E + EEEEEE+ EE + E+E E E + + +
Sbjct: 265 PGGEEEEEEEEGEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 324
Query: 399 GRGKAPKKSGAEVKGSGRGRGGAAAAANKSGSSGK 295
G G+ P G G G G GG G G+
Sbjct: 325 GEGEGPGGEGEGPGGEGEGPGGEGEGPGGEGEEGE 359
>gb|EAA27185.1| predicted protein [Neurospora crassa]
Length = 2992
Score = 49.7 bits (117), Expect = 3e-05
Identities = 26/83 (31%), Positives = 43/83 (51%)
Frame = -3
Query: 540 KKRKKAKEPSDSEEEEEEDAEESDHSEDEVNGEAEVKRSRGGKTSGKGRGKAPKKSGAEV 361
++RK+A+E ++ EEE+ EE D +D+ + K+ + GK KG+GKA K +
Sbjct: 2833 RRRKRAREREEARRAEEEEEEEEDSDDDDEGEGDKGKKKKKGKAIDKGKGKAIDKGKGKA 2892
Query: 360 KGSGRGRGGAAAAANKSGSSGKR 292
G+G+ KS GK+
Sbjct: 2893 VDKGKGK------TTKSTKKGKK 2909
Score = 33.9 bits (76), Expect = 1.6
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Frame = -3
Query: 588 PKKPAKKGAKKGADHSKKRKKAKEPSDSEEEEEEDAEESDHSEDEVNGEAE--------- 436
PKK K+ K+ AD S + +AK P + + E+DA +D+V G+ +
Sbjct: 1695 PKK-RKRPLKRSADKSSSQPQAKRPRLTGQAAEDDAAAK---KDQVKGKKKTKPAEAAAK 1750
Query: 435 ----------VKRSRGGKTSGKGRGKAPKKSGAEVKGSGRGRG 337
+KR GK+ PK S G+G G G
Sbjct: 1751 AKADTGKRKPIKRGPAGKSQAPASVPLPKGSTPVCPGAGAGAG 1793
Score = 32.3 bits (72), Expect = 4.7
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Frame = -3
Query: 591 APKKPAKKGAKKGADHSKKRKKAKEPSDSEEEEEEDAEESDHSEDEVNGEAEVKRSRGGK 412
AP P A +D + SDS+ + ++D++ D S+D+ + +++++ GG+
Sbjct: 779 APSSPVGSWASDASDRDD------DMSDSDHDSDDDSD--DDSDDDSDNDSDIE--MGGQ 828
Query: 411 TSGKGRGKAP---------KKSGAEVKGSGRGRGGAAAAANKSGSSGKRG 289
+G+G A K SG RG + G G+RG
Sbjct: 829 EQSQGQGIASRLKMVLDIGKLSGVSKAMKSRGPTRGISKPRGRGFRGRRG 878
Score = 32.0 bits (71), Expect = 6.1
Identities = 23/86 (26%), Positives = 37/86 (42%), Gaps = 4/86 (4%)
Frame = -3
Query: 531 KKAKEPSDSEEEEEEDAEESDHSEDEVNGEAEVKRSRGGKTSGKGRGKAPKKSGAEVKGS 352
K+A++ S E E+E+ D G+ + R R + +GR +A + G +
Sbjct: 1853 KRARQLSPDEPEQEQGGNNEDA------GDGQKDRQRPATSQPQGRREAGRGQGQSQRQP 1906
Query: 351 GRGRGGAAAAA----NKSGSSGKRGR 286
GR AAA ++ S G GR
Sbjct: 1907 PSGRAQAAAPGGDPPSQPSSQGSEGR 1932
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,777,862
Number of Sequences: 1393205
Number of extensions: 11930094
Number of successful extensions: 199430
Number of sequences better than 10.0: 3863
Number of HSP's better than 10.0 without gapping: 84076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150803
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
