Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019861A_C01 KMC019861A_c01
(459 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00104327.1| hypothetical protein [Prochlorococcus marinus ... 33 1.1
ref|NP_772076.1| blr5436 [Bradyrhizobium japonicum] gi|27353711|... 33 1.8
ref|NP_065919.1| dipeptidyl peptidase IV-related protein 3 [Homo... 32 3.1
gb|AAO17263.1| dipeptidyl peptidase IV-related protein-3 [Homo s... 32 3.1
dbj|BAA96016.1| KIAA1492 protein [Homo sapiens] 32 3.1
>gb|ZP_00104327.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 253
Score = 33.5 bits (75), Expect = 1.1
Identities = 19/72 (26%), Positives = 34/72 (46%)
Frame = +3
Query: 54 FNHVINLHSTKNPSSY*LTTETMLSTTSLTSISVKQAIKTRHVEAFLILLRLVYPPLATV 233
F +I +++ KNP S + ++ LS +L + V ++K + F+I Y PL T
Sbjct: 132 FKELIEINNLKNPDSLEVGSKLFLSEKNLNNQEVNTSLKEEKINQFIIKESKKYGPLTTQ 191
Query: 234 TNPLVADADTKW 269
L + K+
Sbjct: 192 QTELEEGSGRKF 203
>ref|NP_772076.1| blr5436 [Bradyrhizobium japonicum] gi|27353711|dbj|BAC50701.1|
blr5436 [Bradyrhizobium japonicum USDA 110]
Length = 344
Score = 32.7 bits (73), Expect = 1.8
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 370 EMWHDGC*HRPSTMRPGVRSLLMRMEHISWLVFYHLVSASA-TRGLVTVASGGYTSLN 200
E+W DG P+ MRPG + L HI L Y L S+ A T V +A +L+
Sbjct: 181 ELWQDGPDWMPNAMRPGYDNFLNVFSHIINLARYLLGSSPAVTESTVEIAGAARITLD 238
>ref|NP_065919.1| dipeptidyl peptidase IV-related protein 3 [Homo sapiens]
gi|22658413|gb|AAH30832.1| similar to dipeptidyl
aminopeptidase-like protein [Homo sapiens]
Length = 796
Score = 32.0 bits (71), Expect = 3.1
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Frame = +3
Query: 63 VINLHSTKNPSSY-*LTTETMLSTTSLTSISVKQAIKTRHVEAFLILLRLVYP 218
V++LHST NP+ Y L + +ML L K IK H++ + + L+L P
Sbjct: 500 VVSLHSTDNPAKYFILESNSMLKEAILKKKIGKPEIKILHIDDYELPLQLSLP 552
>gb|AAO17263.1| dipeptidyl peptidase IV-related protein-3 [Homo sapiens]
Length = 796
Score = 32.0 bits (71), Expect = 3.1
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Frame = +3
Query: 63 VINLHSTKNPSSY-*LTTETMLSTTSLTSISVKQAIKTRHVEAFLILLRLVYP 218
V++LHST NP+ Y L + +ML L K IK H++ + + L+L P
Sbjct: 500 VVSLHSTDNPAKYFILESNSMLKEAILKKKIGKPEIKILHIDDYELPLQLSLP 552
>dbj|BAA96016.1| KIAA1492 protein [Homo sapiens]
Length = 711
Score = 32.0 bits (71), Expect = 3.1
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Frame = +3
Query: 63 VINLHSTKNPSSY-*LTTETMLSTTSLTSISVKQAIKTRHVEAFLILLRLVYP 218
V++LHST NP+ Y L + +ML L K IK H++ + + L+L P
Sbjct: 415 VVSLHSTDNPAKYFILESNSMLKEAILKKKIGKPEIKILHIDDYELPLQLSLP 467
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,386,012
Number of Sequences: 1393205
Number of extensions: 6807541
Number of successful extensions: 15352
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15351
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
